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Mutant Information

Mutant Name	FN710-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN710-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 17

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 13934672 C-T Hetero INTERGENIC
SBS Chr2 29079205 A-C Hetero INTERGENIC
SBS Chr2 34509235 C-T Hetero INTERGENIC
SBS Chr3 23226241 A-G Hetero INTERGENIC
SBS Chr3 34429636 C-A Homo INTERGENIC
SBS Chr5 9925043 T-A Hetero INTERGENIC
SBS Chr6 12571044 G-T Homo NON_SYNONYMOUS_CODING OsKitaake06g134200
SBS Chr6 19825809 T-C Homo INTERGENIC
SBS Chr7 18864556 A-T Homo INTERGENIC
SBS Chr7 25579969 T-A Hetero INTRON
SBS Chr8 26563506 T-A Hetero INTERGENIC
SBS Chr8 26572857 G-A Hetero INTRON
SBS Chr8 26661285 G-C Hetero INTRON
SBS Chr8 26723961 G-A Hetero INTERGENIC
SBS Chr9 942577 C-T Homo INTERGENIC
SBS Chr11 10211642 T-G Homo INTERGENIC
SBS Chr11 27754991 A-G Hetero INTERGENIC

Deletions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 9903597 9903607 10
Deletion Chr1 10608531 10608539 8
Deletion Chr10 14991008 14991009 1
Deletion Chr12 15455766 15455767 1
Deletion Chr1 18485769 18485780 11
Deletion Chr7 23125089 23125090 1
Deletion Chr1 27211271 27211275 4
Deletion Chr5 29773097 29773099 2
Deletion Chr4 31508329 31508337 8

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 28404876 28404879 2
Insertion Chr4 6671682 6671685 2
Insertion Chr7 11659342 11659344 1
Insertion Chr1 43966419 43966424 4

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 16210545 16613373
Inversion Chr8 16210579 16613378
Inversion Chr12 21147650 21782788
Inversion Chr12 21148094 21782848

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 21147706 Chr9 1899739

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13934672	C-T	Hetero	INTERGENIC
SBS	Chr2	29079205	A-C	Hetero	INTERGENIC
SBS	Chr2	34509235	C-T	Hetero	INTERGENIC
SBS	Chr3	23226241	A-G	Hetero	INTERGENIC
SBS	Chr3	34429636	C-A	Homo	INTERGENIC
SBS	Chr5	9925043	T-A	Hetero	INTERGENIC
SBS	Chr6	12571044	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g134200
SBS	Chr6	19825809	T-C	Homo	INTERGENIC
SBS	Chr7	18864556	A-T	Homo	INTERGENIC
SBS	Chr7	25579969	T-A	Hetero	INTRON
SBS	Chr8	26563506	T-A	Hetero	INTERGENIC
SBS	Chr8	26572857	G-A	Hetero	INTRON
SBS	Chr8	26661285	G-C	Hetero	INTRON
SBS	Chr8	26723961	G-A	Hetero	INTERGENIC
SBS	Chr9	942577	C-T	Homo	INTERGENIC
SBS	Chr11	10211642	T-G	Homo	INTERGENIC
SBS	Chr11	27754991	A-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	9903597	9903607	10
Deletion	Chr1	10608531	10608539	8
Deletion	Chr10	14991008	14991009	1
Deletion	Chr12	15455766	15455767	1
Deletion	Chr1	18485769	18485780	11
Deletion	Chr7	23125089	23125090	1
Deletion	Chr1	27211271	27211275	4
Deletion	Chr5	29773097	29773099	2
Deletion	Chr4	31508329	31508337	8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	16210545	16613373
Inversion	Chr8	16210579	16613378
Inversion	Chr12	21147650	21782788
Inversion	Chr12	21148094	21782848

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes