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Mutant Information

Mutant Name	FN711-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN711-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 33

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3482723 G-A Hetero INTERGENIC
SBS Chr1 25905406 A-T Hetero INTERGENIC
SBS Chr1 27050546 G-A Hetero INTERGENIC
SBS Chr1 27972823 C-A Hetero INTERGENIC
SBS Chr1 35885562 A-T Hetero INTERGENIC
SBS Chr1 42257252 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g465500
SBS Chr2 6401629 G-A Hetero INTERGENIC
SBS Chr2 9066289 A-T Hetero UTR_5_PRIME
SBS Chr3 6556505 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g093400
SBS Chr3 12035476 C-T Homo INTERGENIC
SBS Chr4 5674006 A-G Hetero INTERGENIC
SBS Chr4 10917775 T-A Hetero INTERGENIC
SBS Chr4 16610259 T-C Hetero INTERGENIC
SBS Chr4 24427383 C-T Hetero INTRON
SBS Chr5 11779250 G-A Homo INTERGENIC
SBS Chr5 14965661 G-T Hetero INTERGENIC
SBS Chr5 16966909 G-A Hetero INTERGENIC
SBS Chr5 30171931 A-T Hetero INTERGENIC
SBS Chr6 27143057 C-A Hetero INTRON
SBS Chr7 7740803 G-A Hetero INTRON
SBS Chr7 20669797 G-A Homo INTRON
SBS Chr8 10884367 C-G Hetero INTERGENIC
SBS Chr8 21261515 C-T Hetero INTERGENIC
SBS Chr8 21261516 C-T Hetero INTERGENIC
SBS Chr9 940909 C-T Hetero INTERGENIC
SBS Chr9 5400308 A-C Hetero INTRON
SBS Chr9 6252057 G-T Hetero INTERGENIC
SBS Chr9 14393700 C-T Hetero INTERGENIC
SBS Chr10 18089576 A-G Hetero INTERGENIC
SBS Chr11 17552570 C-T Homo INTERGENIC
SBS Chr11 19448592 C-A Homo INTERGENIC
SBS Chr12 13870188 A-T Hetero INTERGENIC
SBS Chr12 20361754 G-A Hetero INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 2261715 2261720 5
Deletion Chr6 3942001 3954000 11999 3
Deletion Chr12 5072938 5072939 1
Deletion Chr2 6394256 6394257 1
Deletion Chr6 10996701 10996702 1
Deletion Chr5 13318626 13318629 3
Deletion Chr10 19764295 19764298 3
Deletion Chr8 19946910 19946911 1
Deletion Chr4 20474479 20474484 5 OsKitaake04g110500
Deletion Chr10 22961457 22961463 6
Deletion Chr7 23525892 23525894 2
Deletion Chr1 24086001 24360000 273999 32
Deletion Chr2 33630975 33630980 5
Deletion Chr1 34045885 34045886 1
Deletion Chr3 34080018 34080020 2

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 6508369 6508372 2
Insertion Chr5 15202633 15202636 2
Insertion Chr5 16412157 16412161 3

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 3953419 3954137 OsKitaake06g055000
Inversion Chr4 7327257 7330409
Inversion Chr8 21187372 21716438 OsKitaake08g164200
Inversion Chr8 21187375 21716438 OsKitaake08g164200

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 6738508 Chr6 3953425 OsKitaake06g055000
Translocation Chr7 21138918 Chr4 7330301 OsKitaake07g174900

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3482723	G-A	Hetero	INTERGENIC
SBS	Chr1	25905406	A-T	Hetero	INTERGENIC
SBS	Chr1	27050546	G-A	Hetero	INTERGENIC
SBS	Chr1	27972823	C-A	Hetero	INTERGENIC
SBS	Chr1	35885562	A-T	Hetero	INTERGENIC
SBS	Chr1	42257252	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g465500
SBS	Chr2	6401629	G-A	Hetero	INTERGENIC
SBS	Chr2	9066289	A-T	Hetero	UTR_5_PRIME
SBS	Chr3	6556505	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g093400
SBS	Chr3	12035476	C-T	Homo	INTERGENIC
SBS	Chr4	5674006	A-G	Hetero	INTERGENIC
SBS	Chr4	10917775	T-A	Hetero	INTERGENIC
SBS	Chr4	16610259	T-C	Hetero	INTERGENIC
SBS	Chr4	24427383	C-T	Hetero	INTRON
SBS	Chr5	11779250	G-A	Homo	INTERGENIC
SBS	Chr5	14965661	G-T	Hetero	INTERGENIC
SBS	Chr5	16966909	G-A	Hetero	INTERGENIC
SBS	Chr5	30171931	A-T	Hetero	INTERGENIC
SBS	Chr6	27143057	C-A	Hetero	INTRON
SBS	Chr7	7740803	G-A	Hetero	INTRON
SBS	Chr7	20669797	G-A	Homo	INTRON
SBS	Chr8	10884367	C-G	Hetero	INTERGENIC
SBS	Chr8	21261515	C-T	Hetero	INTERGENIC
SBS	Chr8	21261516	C-T	Hetero	INTERGENIC
SBS	Chr9	940909	C-T	Hetero	INTERGENIC
SBS	Chr9	5400308	A-C	Hetero	INTRON
SBS	Chr9	6252057	G-T	Hetero	INTERGENIC
SBS	Chr9	14393700	C-T	Hetero	INTERGENIC
SBS	Chr10	18089576	A-G	Hetero	INTERGENIC
SBS	Chr11	17552570	C-T	Homo	INTERGENIC
SBS	Chr11	19448592	C-A	Homo	INTERGENIC
SBS	Chr12	13870188	A-T	Hetero	INTERGENIC
SBS	Chr12	20361754	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	2261715	2261720	5
Deletion	Chr6	3942001	3954000	11999	3
Deletion	Chr12	5072938	5072939	1
Deletion	Chr2	6394256	6394257	1
Deletion	Chr6	10996701	10996702	1
Deletion	Chr5	13318626	13318629	3
Deletion	Chr10	19764295	19764298	3
Deletion	Chr8	19946910	19946911	1
Deletion	Chr4	20474479	20474484	5	OsKitaake04g110500
Deletion	Chr10	22961457	22961463	6
Deletion	Chr7	23525892	23525894	2
Deletion	Chr1	24086001	24360000	273999	32
Deletion	Chr2	33630975	33630980	5
Deletion	Chr1	34045885	34045886	1
Deletion	Chr3	34080018	34080020	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	3953419	3954137	OsKitaake06g055000
Inversion	Chr4	7327257	7330409
Inversion	Chr8	21187372	21716438	OsKitaake08g164200
Inversion	Chr8	21187375	21716438	OsKitaake08g164200

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes