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Mutant Information

Mutant Name	FN712-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN712-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 29

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 7598689 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake01g095500
SBS Chr2 11415470 G-A Hetero INTERGENIC
SBS Chr2 14994203 A-T Homo INTERGENIC
SBS Chr2 24035861 G-A Homo INTERGENIC
SBS Chr2 36384196 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g385500
SBS Chr2 36521151 C-T Hetero INTERGENIC
SBS Chr2 36555243 T-C Hetero INTRON
SBS Chr3 3962044 T-C Hetero INTERGENIC
SBS Chr3 33351934 T-A Hetero INTERGENIC
SBS Chr4 1467819 C-G Homo INTERGENIC
SBS Chr4 8508741 T-A Hetero INTERGENIC
SBS Chr4 18308884 C-T Hetero INTERGENIC
SBS Chr4 31911328 C-T Hetero UTR_3_PRIME
SBS Chr5 18070791 C-T Hetero INTERGENIC
SBS Chr5 25819449 T-G Hetero NON_SYNONYMOUS_CODING OsKitaake05g227300
SBS Chr6 14935954 C-T Homo INTERGENIC
SBS Chr7 14953863 G-A Hetero INTERGENIC
SBS Chr7 26459732 C-T Homo INTERGENIC
SBS Chr8 6014357 T-C Hetero UTR_5_PRIME
SBS Chr8 21294097 G-C Homo INTERGENIC
SBS Chr8 28918100 G-A Hetero INTERGENIC
SBS Chr8 29215821 G-A Hetero SYNONYMOUS_CODING
SBS Chr9 2730781 A-T Hetero INTERGENIC
SBS Chr10 259333 C-T Hetero INTERGENIC
SBS Chr10 1809965 G-A Hetero INTERGENIC
SBS Chr10 3519133 T-C Hetero INTERGENIC
SBS Chr11 3284202 A-T Hetero INTERGENIC
SBS Chr12 754261 C-T Homo INTRON
SBS Chr12 10080452 A-G Hetero INTERGENIC

Deletions: 25

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 2411450 2411451 1
Deletion Chr6 5472409 5472413 4
Deletion Chr7 6128529 6128532 3
Deletion Chr5 6488231 6488234 3
Deletion Chr11 7134576 7134591 15
Deletion Chr6 7287777 7287779 2
Deletion Chr1 10102001 10115000 12999 2
Deletion Chr6 10466958 10466959 1
Deletion Chr5 14261986 14261988 2
Deletion Chr4 15087307 15087311 4
Deletion Chr1 15509814 15509816 2
Deletion Chr7 15715226 15715229 3 OsKitaake07g130050
Deletion Chr10 16296176 16296178 2 OsKitaake10g109700
Deletion Chr5 16437979 16437994 15
Deletion Chr5 17825411 17825415 4 OsKitaake05g137600
Deletion Chr5 17897425 17897445 20
Deletion Chr11 17996831 17996846 15
Deletion Chr4 18916429 18916430 1
Deletion Chr9 21858969 21858991 22 OsKitaake09g193600
Deletion Chr1 21887672 21887677 5
Deletion Chr3 21973328 21973331 3
Deletion Chr8 22127311 22127312 1
Deletion Chr2 24413652 24413660 8
Deletion Chr6 28940601 28940607 6
Deletion Chr1 31509523 31509525 2

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 28439711 28439714 2
Insertion Chr2 24414177 24414179 1
Insertion Chr6 7838 7840 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 5674487 5845596 OsKitaake01g074000
Inversion Chr1 5845598 5929548 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7598689	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g095500
SBS	Chr2	11415470	G-A	Hetero	INTERGENIC
SBS	Chr2	14994203	A-T	Homo	INTERGENIC
SBS	Chr2	24035861	G-A	Homo	INTERGENIC
SBS	Chr2	36384196	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g385500
SBS	Chr2	36521151	C-T	Hetero	INTERGENIC
SBS	Chr2	36555243	T-C	Hetero	INTRON
SBS	Chr3	3962044	T-C	Hetero	INTERGENIC
SBS	Chr3	33351934	T-A	Hetero	INTERGENIC
SBS	Chr4	1467819	C-G	Homo	INTERGENIC
SBS	Chr4	8508741	T-A	Hetero	INTERGENIC
SBS	Chr4	18308884	C-T	Hetero	INTERGENIC
SBS	Chr4	31911328	C-T	Hetero	UTR_3_PRIME
SBS	Chr5	18070791	C-T	Hetero	INTERGENIC
SBS	Chr5	25819449	T-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g227300
SBS	Chr6	14935954	C-T	Homo	INTERGENIC
SBS	Chr7	14953863	G-A	Hetero	INTERGENIC
SBS	Chr7	26459732	C-T	Homo	INTERGENIC
SBS	Chr8	6014357	T-C	Hetero	UTR_5_PRIME
SBS	Chr8	21294097	G-C	Homo	INTERGENIC
SBS	Chr8	28918100	G-A	Hetero	INTERGENIC
SBS	Chr8	29215821	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr9	2730781	A-T	Hetero	INTERGENIC
SBS	Chr10	259333	C-T	Hetero	INTERGENIC
SBS	Chr10	1809965	G-A	Hetero	INTERGENIC
SBS	Chr10	3519133	T-C	Hetero	INTERGENIC
SBS	Chr11	3284202	A-T	Hetero	INTERGENIC
SBS	Chr12	754261	C-T	Homo	INTRON
SBS	Chr12	10080452	A-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	2411450	2411451	1
Deletion	Chr6	5472409	5472413	4
Deletion	Chr7	6128529	6128532	3
Deletion	Chr5	6488231	6488234	3
Deletion	Chr11	7134576	7134591	15
Deletion	Chr6	7287777	7287779	2
Deletion	Chr1	10102001	10115000	12999	2
Deletion	Chr6	10466958	10466959	1
Deletion	Chr5	14261986	14261988	2
Deletion	Chr4	15087307	15087311	4
Deletion	Chr1	15509814	15509816	2
Deletion	Chr7	15715226	15715229	3	OsKitaake07g130050
Deletion	Chr10	16296176	16296178	2	OsKitaake10g109700
Deletion	Chr5	16437979	16437994	15
Deletion	Chr5	17825411	17825415	4	OsKitaake05g137600
Deletion	Chr5	17897425	17897445	20
Deletion	Chr11	17996831	17996846	15
Deletion	Chr4	18916429	18916430	1
Deletion	Chr9	21858969	21858991	22	OsKitaake09g193600
Deletion	Chr1	21887672	21887677	5
Deletion	Chr3	21973328	21973331	3
Deletion	Chr8	22127311	22127312	1
Deletion	Chr2	24413652	24413660	8
Deletion	Chr6	28940601	28940607	6
Deletion	Chr1	31509523	31509525	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	5674487	5845596	OsKitaake01g074000
Inversion	Chr1	5845598	5929548	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes