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Mutant Information

Mutant Name	FN713-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN713-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 37

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 8748045 C-T Homo INTERGENIC
SBS Chr1 16484590 A-G Homo INTERGENIC
SBS Chr1 29378704 T-C Hetero UTR_3_PRIME
SBS Chr1 30627101 G-A Hetero INTERGENIC
SBS Chr1 31515274 C-T Hetero INTERGENIC
SBS Chr1 41581504 C-T Hetero INTERGENIC
SBS Chr2 13054817 C-T Homo INTERGENIC
SBS Chr2 16759488 C-T Homo INTERGENIC
SBS Chr2 30958219 G-A Hetero SYNONYMOUS_CODING
SBS Chr2 30958220 C-T Hetero SYNONYMOUS_CODING
SBS Chr2 31245684 G-T Hetero INTERGENIC
SBS Chr3 2152230 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake03g030700
SBS Chr3 2990543 G-A Hetero INTERGENIC
SBS Chr3 17646120 C-T Homo INTERGENIC
SBS Chr3 29729752 C-T Homo INTRON
SBS Chr4 31286155 G-T Homo UTR_5_PRIME
SBS Chr5 2258284 C-T Homo INTERGENIC
SBS Chr5 6169335 T-A Homo INTERGENIC
SBS Chr5 9244066 T-A Homo INTERGENIC
SBS Chr5 24300835 A-G Hetero SYNONYMOUS_CODING
SBS Chr5 28563281 C-A Hetero INTERGENIC
SBS Chr6 25969245 A-G Hetero INTRON
SBS Chr7 8239483 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake07g089900
SBS Chr8 3029009 G-A Hetero INTERGENIC
SBS Chr8 6042654 T-C Homo NON_SYNONYMOUS_CODING OsKitaake08g065050
SBS Chr8 13830902 C-T Homo INTERGENIC
SBS Chr8 14741955 C-T Homo INTERGENIC
SBS Chr8 17004795 C-T Homo INTRON
SBS Chr9 538976 G-A Hetero INTERGENIC
SBS Chr9 9841951 T-G Hetero INTERGENIC
SBS Chr9 11404860 T-C Hetero INTERGENIC
SBS Chr10 3460341 C-T Homo INTERGENIC
SBS Chr10 17234574 C-G Homo INTERGENIC
SBS Chr11 8707768 G-A Homo INTERGENIC
SBS Chr11 13263003 C-A Hetero INTERGENIC
SBS Chr11 21305089 C-T Hetero INTERGENIC
SBS Chr12 27096536 C-T Hetero INTRON

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 2086934 2086936 2
Deletion Chr3 6535719 6535724 5 OsKitaake03g093100
Deletion Chr11 11174804 11174805 1
Deletion Chr5 16411887 16411904 17
Deletion Chr1 18587240 18587246 6
Deletion Chr8 19772545 19772548 3
Deletion Chr3 19904681 19904684 3
Deletion Chr4 21760321 21760323 2
Deletion Chr5 21919077 21919084 7
Deletion Chr10 23915921 23915922 1
Deletion Chr6 24466766 24466767 1 OsKitaake06g216200
Deletion Chr6 27120836 27120848 12
Deletion Chr1 34967443 34967447 4

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 3924524 3924527 2
Insertion Chr5 30256122 30256124 1

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 37266200 37604901

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr5 18037705 Chr1 37604907
Translocation Chr5 18052390 Chr1 37266207 OsKitaake05g140400

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8748045	C-T	Homo	INTERGENIC
SBS	Chr1	16484590	A-G	Homo	INTERGENIC
SBS	Chr1	29378704	T-C	Hetero	UTR_3_PRIME
SBS	Chr1	30627101	G-A	Hetero	INTERGENIC
SBS	Chr1	31515274	C-T	Hetero	INTERGENIC
SBS	Chr1	41581504	C-T	Hetero	INTERGENIC
SBS	Chr2	13054817	C-T	Homo	INTERGENIC
SBS	Chr2	16759488	C-T	Homo	INTERGENIC
SBS	Chr2	30958219	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr2	30958220	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr2	31245684	G-T	Hetero	INTERGENIC
SBS	Chr3	2152230	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g030700
SBS	Chr3	2990543	G-A	Hetero	INTERGENIC
SBS	Chr3	17646120	C-T	Homo	INTERGENIC
SBS	Chr3	29729752	C-T	Homo	INTRON
SBS	Chr4	31286155	G-T	Homo	UTR_5_PRIME
SBS	Chr5	2258284	C-T	Homo	INTERGENIC
SBS	Chr5	6169335	T-A	Homo	INTERGENIC
SBS	Chr5	9244066	T-A	Homo	INTERGENIC
SBS	Chr5	24300835	A-G	Hetero	SYNONYMOUS_CODING
SBS	Chr5	28563281	C-A	Hetero	INTERGENIC
SBS	Chr6	25969245	A-G	Hetero	INTRON
SBS	Chr7	8239483	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g089900
SBS	Chr8	3029009	G-A	Hetero	INTERGENIC
SBS	Chr8	6042654	T-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake08g065050
SBS	Chr8	13830902	C-T	Homo	INTERGENIC
SBS	Chr8	14741955	C-T	Homo	INTERGENIC
SBS	Chr8	17004795	C-T	Homo	INTRON
SBS	Chr9	538976	G-A	Hetero	INTERGENIC
SBS	Chr9	9841951	T-G	Hetero	INTERGENIC
SBS	Chr9	11404860	T-C	Hetero	INTERGENIC
SBS	Chr10	3460341	C-T	Homo	INTERGENIC
SBS	Chr10	17234574	C-G	Homo	INTERGENIC
SBS	Chr11	8707768	G-A	Homo	INTERGENIC
SBS	Chr11	13263003	C-A	Hetero	INTERGENIC
SBS	Chr11	21305089	C-T	Hetero	INTERGENIC
SBS	Chr12	27096536	C-T	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	2086934	2086936	2
Deletion	Chr3	6535719	6535724	5	OsKitaake03g093100
Deletion	Chr11	11174804	11174805	1
Deletion	Chr5	16411887	16411904	17
Deletion	Chr1	18587240	18587246	6
Deletion	Chr8	19772545	19772548	3
Deletion	Chr3	19904681	19904684	3
Deletion	Chr4	21760321	21760323	2
Deletion	Chr5	21919077	21919084	7
Deletion	Chr10	23915921	23915922	1
Deletion	Chr6	24466766	24466767	1	OsKitaake06g216200
Deletion	Chr6	27120836	27120848	12
Deletion	Chr1	34967443	34967447	4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	37266200	37604901

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes