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Mutant Information

Mutant Name	FN714-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN714-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 38

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 12456864 A-C Hetero INTERGENIC
SBS Chr1 16849987 C-T Hetero INTERGENIC
SBS Chr1 18858724 G-A Hetero INTERGENIC
SBS Chr1 19343115 A-G Hetero INTERGENIC
SBS Chr1 29156006 C-T Hetero INTERGENIC
SBS Chr2 4036411 G-A Homo INTERGENIC
SBS Chr2 36145765 T-C Homo UTR_3_PRIME
SBS Chr2 36145766 A-T Homo UTR_3_PRIME
SBS Chr2 36145767 C-T Homo UTR_3_PRIME
SBS Chr3 6455083 C-T Hetero SYNONYMOUS_CODING
SBS Chr3 10333148 T-A Hetero INTRON
SBS Chr3 11297706 T-C Hetero UTR_5_PRIME
SBS Chr3 13659546 C-T Hetero INTERGENIC
SBS Chr3 20134592 G-C Hetero INTERGENIC
SBS Chr3 28229166 G-A Hetero INTRON
SBS Chr4 3391120 G-C Hetero INTERGENIC
SBS Chr4 11264777 G-T Hetero INTERGENIC
SBS Chr4 11348333 G-T Hetero INTERGENIC
SBS Chr4 11615800 T-A Hetero INTERGENIC
SBS Chr4 17847617 G-C Hetero INTERGENIC
SBS Chr4 26478055 G-A Hetero INTERGENIC
SBS Chr4 30405616 G-A Homo UTR_5_PRIME
SBS Chr4 34289581 C-T Hetero INTERGENIC
SBS Chr5 1788557 T-G Homo INTRON
SBS Chr5 3671797 T-C Hetero INTERGENIC
SBS Chr6 847245 A-G Hetero INTRON
SBS Chr6 19089551 G-A Hetero INTERGENIC
SBS Chr7 19432408 C-T Homo INTRON
SBS Chr7 20827585 C-T Homo INTERGENIC
SBS Chr7 25677176 G-A Homo INTERGENIC
SBS Chr7 25677177 A-T Homo INTERGENIC
SBS Chr9 8847347 G-A Hetero INTERGENIC
SBS Chr10 478961 T-A Hetero INTERGENIC
SBS Chr10 12571339 A-C Hetero INTRON
SBS Chr11 6553613 A-G Hetero INTERGENIC
SBS Chr11 24346080 G-T Hetero INTERGENIC
SBS Chr12 9933830 G-A Hetero INTERGENIC
SBS Chr12 24568052 G-T Homo INTERGENIC

Deletions: 20

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 1567203 1567205 2
Deletion Chr10 2164678 2164679 1
Deletion Chr3 4970620 4970621 1
Deletion Chr3 7843725 7843727 2
Deletion Chr9 8225738 8225744 6
Deletion Chr2 10273881 10273885 4
Deletion Chr1 10471260 10471277 17
Deletion Chr10 10552232 10552234 2
Deletion Chr11 11002005 11002006 1
Deletion Chr2 16130316 16130317 1
Deletion Chr3 16341935 16341940 5
Deletion Chr10 23333463 23333466 3
Deletion Chr12 23596476 23596477 1
Deletion Chr8 24734795 24734803 8
Deletion Chr7 25002719 25002739 20
Deletion Chr12 25399182 25399187 5
Deletion Chr8 25936443 25936446 3
Deletion Chr1 27946569 27946570 1
Deletion Chr1 30096797 30096798 1
Deletion Chr3 32006404 32006405 1

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 26842389 26842392 2
Insertion Chr3 28439059 28439062 2
Insertion Chr8 8240831 8240834 2

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr5 23043868 Chr1 22184334 OsKitaake05g191600

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12456864	A-C	Hetero	INTERGENIC
SBS	Chr1	16849987	C-T	Hetero	INTERGENIC
SBS	Chr1	18858724	G-A	Hetero	INTERGENIC
SBS	Chr1	19343115	A-G	Hetero	INTERGENIC
SBS	Chr1	29156006	C-T	Hetero	INTERGENIC
SBS	Chr2	4036411	G-A	Homo	INTERGENIC
SBS	Chr2	36145765	T-C	Homo	UTR_3_PRIME
SBS	Chr2	36145766	A-T	Homo	UTR_3_PRIME
SBS	Chr2	36145767	C-T	Homo	UTR_3_PRIME
SBS	Chr3	6455083	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr3	10333148	T-A	Hetero	INTRON
SBS	Chr3	11297706	T-C	Hetero	UTR_5_PRIME
SBS	Chr3	13659546	C-T	Hetero	INTERGENIC
SBS	Chr3	20134592	G-C	Hetero	INTERGENIC
SBS	Chr3	28229166	G-A	Hetero	INTRON
SBS	Chr4	3391120	G-C	Hetero	INTERGENIC
SBS	Chr4	11264777	G-T	Hetero	INTERGENIC
SBS	Chr4	11348333	G-T	Hetero	INTERGENIC
SBS	Chr4	11615800	T-A	Hetero	INTERGENIC
SBS	Chr4	17847617	G-C	Hetero	INTERGENIC
SBS	Chr4	26478055	G-A	Hetero	INTERGENIC
SBS	Chr4	30405616	G-A	Homo	UTR_5_PRIME
SBS	Chr4	34289581	C-T	Hetero	INTERGENIC
SBS	Chr5	1788557	T-G	Homo	INTRON
SBS	Chr5	3671797	T-C	Hetero	INTERGENIC
SBS	Chr6	847245	A-G	Hetero	INTRON
SBS	Chr6	19089551	G-A	Hetero	INTERGENIC
SBS	Chr7	19432408	C-T	Homo	INTRON
SBS	Chr7	20827585	C-T	Homo	INTERGENIC
SBS	Chr7	25677176	G-A	Homo	INTERGENIC
SBS	Chr7	25677177	A-T	Homo	INTERGENIC
SBS	Chr9	8847347	G-A	Hetero	INTERGENIC
SBS	Chr10	478961	T-A	Hetero	INTERGENIC
SBS	Chr10	12571339	A-C	Hetero	INTRON
SBS	Chr11	6553613	A-G	Hetero	INTERGENIC
SBS	Chr11	24346080	G-T	Hetero	INTERGENIC
SBS	Chr12	9933830	G-A	Hetero	INTERGENIC
SBS	Chr12	24568052	G-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	1567203	1567205	2
Deletion	Chr10	2164678	2164679	1
Deletion	Chr3	4970620	4970621	1
Deletion	Chr3	7843725	7843727	2
Deletion	Chr9	8225738	8225744	6
Deletion	Chr2	10273881	10273885	4
Deletion	Chr1	10471260	10471277	17
Deletion	Chr10	10552232	10552234	2
Deletion	Chr11	11002005	11002006	1
Deletion	Chr2	16130316	16130317	1
Deletion	Chr3	16341935	16341940	5
Deletion	Chr10	23333463	23333466	3
Deletion	Chr12	23596476	23596477	1
Deletion	Chr8	24734795	24734803	8
Deletion	Chr7	25002719	25002739	20
Deletion	Chr12	25399182	25399187	5
Deletion	Chr8	25936443	25936446	3
Deletion	Chr1	27946569	27946570	1
Deletion	Chr1	30096797	30096798	1
Deletion	Chr3	32006404	32006405	1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	23043868	Chr1	22184334	OsKitaake05g191600

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes