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Mutant Information

Mutant Name	FN718-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN718-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Low (Between 25% and 75%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 34

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 398521 T-A Hetero INTRON
SBS Chr1 398522 G-T Hetero INTRON
SBS Chr1 7090030 C-A Hetero INTERGENIC
SBS Chr1 7090031 G-A Hetero INTERGENIC
SBS Chr1 34874114 C-T Hetero UTR_5_PRIME
SBS Chr1 40505352 A-T Hetero INTERGENIC
SBS Chr2 3502811 C-T Homo UTR_3_PRIME
SBS Chr2 17536382 T-A Homo INTERGENIC
SBS Chr2 17536383 G-T Homo INTERGENIC
SBS Chr2 25734313 A-T Homo INTERGENIC
SBS Chr3 1112988 C-T Hetero SYNONYMOUS_CODING
SBS Chr3 10197002 T-G Hetero INTERGENIC
SBS Chr3 12909541 C-T Homo INTERGENIC
SBS Chr3 29501604 A-G Hetero INTERGENIC
SBS Chr3 31890576 C-A Hetero UTR_5_PRIME
SBS Chr4 23698438 C-T Hetero INTERGENIC
SBS Chr4 27589388 C-T Hetero INTERGENIC
SBS Chr5 8577073 T-A Hetero INTERGENIC
SBS Chr5 14217621 A-G Hetero INTERGENIC
SBS Chr5 15389443 G-A Hetero INTERGENIC
SBS Chr6 11613120 T-C Hetero INTERGENIC
SBS Chr6 25196101 T-A Hetero INTERGENIC
SBS Chr7 9091681 A-T Hetero INTERGENIC
SBS Chr7 20728444 G-A Hetero INTERGENIC
SBS Chr8 6577793 C-T Hetero INTERGENIC
SBS Chr8 22318371 C-T Hetero INTERGENIC
SBS Chr8 24780304 G-A Hetero UTR_3_PRIME
SBS Chr9 17225594 C-T Hetero INTERGENIC
SBS Chr9 22641078 G-T Hetero INTERGENIC
SBS Chr10 12053527 G-A Hetero INTERGENIC
SBS Chr10 13705759 A-G Hetero INTERGENIC
SBS Chr10 18525732 A-C Hetero INTRON
SBS Chr11 18279724 G-A Homo INTERGENIC
SBS Chr12 22070572 C-T Hetero INTERGENIC

Deletions: 20

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 1970601 1970606 5
Deletion Chr9 2107422 2107424 2
Deletion Chr7 3764146 3764149 3
Deletion Chr1 5696449 5696452 3
Deletion Chr9 6336637 6336638 1
Deletion Chr9 7117534 7117536 2
Deletion Chr7 10400308 10400310 2
Deletion Chr10 12223157 12223163 6
Deletion Chr6 12960001 12969000 8999 2
Deletion Chr9 13347994 13348002 8 OsKitaake09g088800
Deletion Chr7 15076524 15076526 2
Deletion Chr1 15398604 15398606 2
Deletion Chr4 21370864 21370873 9
Deletion Chr4 21983637 21983644 7
Deletion Chr3 22133046 22133049 3
Deletion Chr2 26539847 26539848 1 OsKitaake02g265300
Deletion Chr12 26947415 26947417 2
Deletion Chr11 29692612 29692613 1
Deletion Chr5 29834447 29834449 2
Deletion Chr4 33785508 33785509 1

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr8 145201 145204 2
Insertion Chr1 12807083 12807086 2

Inversions: 6

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 6934266 7594630
Inversion Chr1 6934289 7594658
Inversion Chr1 36252674 37038481 2
Inversion Chr1 36252686 37038482 2
Inversion Chr1 43455064 44055755 OsKitaake01g481300
Inversion Chr1 43455070 44055785 OsKitaake01g481300

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	398521	T-A	Hetero	INTRON
SBS	Chr1	398522	G-T	Hetero	INTRON
SBS	Chr1	7090030	C-A	Hetero	INTERGENIC
SBS	Chr1	7090031	G-A	Hetero	INTERGENIC
SBS	Chr1	34874114	C-T	Hetero	UTR_5_PRIME
SBS	Chr1	40505352	A-T	Hetero	INTERGENIC
SBS	Chr2	3502811	C-T	Homo	UTR_3_PRIME
SBS	Chr2	17536382	T-A	Homo	INTERGENIC
SBS	Chr2	17536383	G-T	Homo	INTERGENIC
SBS	Chr2	25734313	A-T	Homo	INTERGENIC
SBS	Chr3	1112988	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr3	10197002	T-G	Hetero	INTERGENIC
SBS	Chr3	12909541	C-T	Homo	INTERGENIC
SBS	Chr3	29501604	A-G	Hetero	INTERGENIC
SBS	Chr3	31890576	C-A	Hetero	UTR_5_PRIME
SBS	Chr4	23698438	C-T	Hetero	INTERGENIC
SBS	Chr4	27589388	C-T	Hetero	INTERGENIC
SBS	Chr5	8577073	T-A	Hetero	INTERGENIC
SBS	Chr5	14217621	A-G	Hetero	INTERGENIC
SBS	Chr5	15389443	G-A	Hetero	INTERGENIC
SBS	Chr6	11613120	T-C	Hetero	INTERGENIC
SBS	Chr6	25196101	T-A	Hetero	INTERGENIC
SBS	Chr7	9091681	A-T	Hetero	INTERGENIC
SBS	Chr7	20728444	G-A	Hetero	INTERGENIC
SBS	Chr8	6577793	C-T	Hetero	INTERGENIC
SBS	Chr8	22318371	C-T	Hetero	INTERGENIC
SBS	Chr8	24780304	G-A	Hetero	UTR_3_PRIME
SBS	Chr9	17225594	C-T	Hetero	INTERGENIC
SBS	Chr9	22641078	G-T	Hetero	INTERGENIC
SBS	Chr10	12053527	G-A	Hetero	INTERGENIC
SBS	Chr10	13705759	A-G	Hetero	INTERGENIC
SBS	Chr10	18525732	A-C	Hetero	INTRON
SBS	Chr11	18279724	G-A	Homo	INTERGENIC
SBS	Chr12	22070572	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	1970601	1970606	5
Deletion	Chr9	2107422	2107424	2
Deletion	Chr7	3764146	3764149	3
Deletion	Chr1	5696449	5696452	3
Deletion	Chr9	6336637	6336638	1
Deletion	Chr9	7117534	7117536	2
Deletion	Chr7	10400308	10400310	2
Deletion	Chr10	12223157	12223163	6
Deletion	Chr6	12960001	12969000	8999	2
Deletion	Chr9	13347994	13348002	8	OsKitaake09g088800
Deletion	Chr7	15076524	15076526	2
Deletion	Chr1	15398604	15398606	2
Deletion	Chr4	21370864	21370873	9
Deletion	Chr4	21983637	21983644	7
Deletion	Chr3	22133046	22133049	3
Deletion	Chr2	26539847	26539848	1	OsKitaake02g265300
Deletion	Chr12	26947415	26947417	2
Deletion	Chr11	29692612	29692613	1
Deletion	Chr5	29834447	29834449	2
Deletion	Chr4	33785508	33785509	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	6934266	7594630
Inversion	Chr1	6934289	7594658
Inversion	Chr1	36252674	37038481	2
Inversion	Chr1	36252686	37038482	2
Inversion	Chr1	43455064	44055755	OsKitaake01g481300
Inversion	Chr1	43455070	44055785	OsKitaake01g481300

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes