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Mutant Information

Mutant Name	FN721-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN721-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 38

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 28926420 G-A Homo INTERGENIC
SBS Chr1 38001517 C-G Hetero UTR_5_PRIME
SBS Chr1 39149787 T-C Hetero INTRON
SBS Chr2 27207694 T-A Hetero INTERGENIC
SBS Chr2 34336017 T-C Hetero INTERGENIC
SBS Chr2 36876743 G-A Hetero INTERGENIC
SBS Chr3 6575783 A-G Hetero UTR_3_PRIME
SBS Chr3 19840386 A-T Hetero INTERGENIC
SBS Chr3 21083895 A-T Hetero INTERGENIC
SBS Chr3 25947916 G-A Hetero INTERGENIC
SBS Chr4 3443384 G-T Hetero INTERGENIC
SBS Chr4 9764394 G-A Hetero INTERGENIC
SBS Chr4 13596076 G-A Hetero INTERGENIC
SBS Chr4 17660062 C-T Hetero INTRON
SBS Chr4 19318976 C-T Hetero STOP_GAINED OsKitaake04g098300
SBS Chr4 20970154 G-T Hetero INTERGENIC
SBS Chr4 22175147 C-T Hetero INTERGENIC
SBS Chr4 29184499 C-A Homo INTERGENIC
SBS Chr4 32031128 T-C Homo INTERGENIC
SBS Chr5 16221112 G-A Homo INTERGENIC
SBS Chr5 17389572 C-G Homo INTRON
SBS Chr5 28719593 G-A Hetero INTERGENIC
SBS Chr6 27043026 C-A Hetero INTERGENIC
SBS Chr7 6772903 C-T Homo INTERGENIC
SBS Chr7 19744709 T-C Hetero INTERGENIC
SBS Chr7 23306907 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake07g203000
SBS Chr8 10090659 T-A Hetero INTERGENIC
SBS Chr8 11539744 G-T Hetero INTERGENIC
SBS Chr8 22485500 T-C Hetero INTERGENIC
SBS Chr10 136977 C-T Homo INTERGENIC
SBS Chr10 7735713 G-A Homo INTERGENIC
SBS Chr10 12934959 T-C Homo INTERGENIC
SBS Chr10 14199203 T-A Hetero INTERGENIC
SBS Chr10 17170037 C-A Homo INTERGENIC
SBS Chr11 12208117 C-T Homo INTERGENIC
SBS Chr11 17947813 G-A Hetero SYNONYMOUS_CODING
SBS Chr11 27197516 C-T Hetero INTERGENIC
SBS Chr12 26810585 T-C Homo NON_SYNONYMOUS_CODING OsKitaake12g223300

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 5220473 5220499 26
Deletion Chr5 11088192 11088201 9
Deletion Chr3 14192516 14192518 2
Deletion Chr8 15556896 15556897 1
Deletion Chr5 17991415 17991416 1
Deletion Chr7 19801001 19819000 17999 OsKitaake07g161800
Deletion Chr9 21171906 21171910 4
Deletion Chr1 22883578 22883582 4
Deletion Chr1 26505087 26505100 13
Deletion Chr6 27179749 27179750 1
Deletion Chr2 27462277 27462284 7
Deletion Chr5 29050376 29050379 3
Deletion Chr1 43616957 43616958 1

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 36723632 36723635 2
Insertion Chr10 20255741 20255744 2
Insertion Chr11 12641742 12641745 2
Insertion Chr10 23539482 23539487 4

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 20703495 21087164
Inversion Chr3 20703764 21087167

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr4 2795887 Chr3 26886301

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	28926420	G-A	Homo	INTERGENIC
SBS	Chr1	38001517	C-G	Hetero	UTR_5_PRIME
SBS	Chr1	39149787	T-C	Hetero	INTRON
SBS	Chr2	27207694	T-A	Hetero	INTERGENIC
SBS	Chr2	34336017	T-C	Hetero	INTERGENIC
SBS	Chr2	36876743	G-A	Hetero	INTERGENIC
SBS	Chr3	6575783	A-G	Hetero	UTR_3_PRIME
SBS	Chr3	19840386	A-T	Hetero	INTERGENIC
SBS	Chr3	21083895	A-T	Hetero	INTERGENIC
SBS	Chr3	25947916	G-A	Hetero	INTERGENIC
SBS	Chr4	3443384	G-T	Hetero	INTERGENIC
SBS	Chr4	9764394	G-A	Hetero	INTERGENIC
SBS	Chr4	13596076	G-A	Hetero	INTERGENIC
SBS	Chr4	17660062	C-T	Hetero	INTRON
SBS	Chr4	19318976	C-T	Hetero	STOP_GAINED	OsKitaake04g098300
SBS	Chr4	20970154	G-T	Hetero	INTERGENIC
SBS	Chr4	22175147	C-T	Hetero	INTERGENIC
SBS	Chr4	29184499	C-A	Homo	INTERGENIC
SBS	Chr4	32031128	T-C	Homo	INTERGENIC
SBS	Chr5	16221112	G-A	Homo	INTERGENIC
SBS	Chr5	17389572	C-G	Homo	INTRON
SBS	Chr5	28719593	G-A	Hetero	INTERGENIC
SBS	Chr6	27043026	C-A	Hetero	INTERGENIC
SBS	Chr7	6772903	C-T	Homo	INTERGENIC
SBS	Chr7	19744709	T-C	Hetero	INTERGENIC
SBS	Chr7	23306907	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g203000
SBS	Chr8	10090659	T-A	Hetero	INTERGENIC
SBS	Chr8	11539744	G-T	Hetero	INTERGENIC
SBS	Chr8	22485500	T-C	Hetero	INTERGENIC
SBS	Chr10	136977	C-T	Homo	INTERGENIC
SBS	Chr10	7735713	G-A	Homo	INTERGENIC
SBS	Chr10	12934959	T-C	Homo	INTERGENIC
SBS	Chr10	14199203	T-A	Hetero	INTERGENIC
SBS	Chr10	17170037	C-A	Homo	INTERGENIC
SBS	Chr11	12208117	C-T	Homo	INTERGENIC
SBS	Chr11	17947813	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr11	27197516	C-T	Hetero	INTERGENIC
SBS	Chr12	26810585	T-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake12g223300

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	5220473	5220499	26
Deletion	Chr5	11088192	11088201	9
Deletion	Chr3	14192516	14192518	2
Deletion	Chr8	15556896	15556897	1
Deletion	Chr5	17991415	17991416	1
Deletion	Chr7	19801001	19819000	17999	OsKitaake07g161800
Deletion	Chr9	21171906	21171910	4
Deletion	Chr1	22883578	22883582	4
Deletion	Chr1	26505087	26505100	13
Deletion	Chr6	27179749	27179750	1
Deletion	Chr2	27462277	27462284	7
Deletion	Chr5	29050376	29050379	3
Deletion	Chr1	43616957	43616958	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	20703495	21087164
Inversion	Chr3	20703764	21087167

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes