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Mutant Information

Mutant Name	FN722-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN722-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 36

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 13763079 C-T Homo INTRON
SBS Chr1 19003853 T-A Homo INTRON
SBS Chr1 28954731 G-A Hetero INTERGENIC
SBS Chr1 36042017 G-A Homo INTERGENIC
SBS Chr2 30484695 T-A Hetero INTERGENIC
SBS Chr3 17254160 A-T Homo INTERGENIC
SBS Chr3 20606004 C-T Hetero INTERGENIC
SBS Chr4 4412483 G-T Hetero INTERGENIC
SBS Chr4 15388292 A-T Hetero INTERGENIC
SBS Chr5 3500573 C-G Homo INTRON
SBS Chr5 11674740 A-T Hetero INTERGENIC
SBS Chr5 11674741 C-T Hetero INTERGENIC
SBS Chr6 1488810 C-A Hetero INTERGENIC
SBS Chr6 15101204 C-A Hetero INTERGENIC
SBS Chr6 25301724 T-C Hetero SYNONYMOUS_CODING
SBS Chr6 25301732 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake06g224300
SBS Chr7 2349015 A-G Hetero INTERGENIC
SBS Chr7 5604865 C-T Hetero INTERGENIC
SBS Chr7 6594257 C-T Hetero INTERGENIC
SBS Chr7 14798054 T-A Hetero INTERGENIC
SBS Chr8 19079216 C-G Homo INTERGENIC
SBS Chr8 22610872 C-T Hetero INTRON
SBS Chr8 25555211 A-T Homo STOP_GAINED OsKitaake08g201700
SBS Chr9 3145602 A-G Homo INTERGENIC
SBS Chr9 12508343 C-T Hetero INTERGENIC
SBS Chr9 22211797 A-T Hetero INTERGENIC
SBS Chr10 3880517 A-G Hetero INTERGENIC
SBS Chr10 9100375 C-T Hetero INTERGENIC
SBS Chr10 9997713 T-C Hetero INTERGENIC
SBS Chr10 16042366 T-A Hetero INTRON
SBS Chr10 16042367 C-T Hetero INTRON
SBS Chr11 8728987 C-T Hetero INTERGENIC
SBS Chr12 14732987 C-G Hetero INTERGENIC
SBS Chr12 14947105 G-C Hetero INTERGENIC
SBS Chr12 20515193 C-A Hetero INTERGENIC
SBS Chr12 24673862 T-A Homo INTERGENIC

Deletions: 22

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 524001 1004000 479999 100
Deletion Chr9 2030274 2030284 10
Deletion Chr5 2039004 2039006 2
Deletion Chr6 2074564 2074574 10
Deletion Chr6 3025634 3025640 6
Deletion Chr2 4939584 4939593 9
Deletion Chr9 6622962 6622983 21
Deletion Chr6 8505980 8505981 1
Deletion Chr3 9291986 9291987 1
Deletion Chr10 12769403 12769405 2
Deletion Chr1 14881151 14881157 6
Deletion Chr6 15617001 15690000 72999 2
Deletion Chr2 15636830 15636845 15
Deletion Chr5 16569487 16569488 1
Deletion Chr11 17598106 17598108 2
Deletion Chr11 18061348 18061361 13
Deletion Chr1 19311956 19311964 8
Deletion Chr2 20950259 20950266 7
Deletion Chr4 21306749 21306750 1
Deletion Chr11 23173815 23173817 2
Deletion Chr12 27056849 27056864 15
Deletion Chr8 27241016 27241018 2

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr6 30076280 30076283 2

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 4454923 4681486 OsKitaake11g059700
Inversion Chr7 6594497 6760947 OsKitaake07g077600
Inversion Chr7 6594498 6760955 OsKitaake07g077600

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 13173905 Chr6 22977800
Translocation Chr8 13174581 Chr6 22977798
Translocation Chr6 15689629 Chr1 33768498 2
Translocation Chr6 15689747 Chr1 33768243 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13763079	C-T	Homo	INTRON
SBS	Chr1	19003853	T-A	Homo	INTRON
SBS	Chr1	28954731	G-A	Hetero	INTERGENIC
SBS	Chr1	36042017	G-A	Homo	INTERGENIC
SBS	Chr2	30484695	T-A	Hetero	INTERGENIC
SBS	Chr3	17254160	A-T	Homo	INTERGENIC
SBS	Chr3	20606004	C-T	Hetero	INTERGENIC
SBS	Chr4	4412483	G-T	Hetero	INTERGENIC
SBS	Chr4	15388292	A-T	Hetero	INTERGENIC
SBS	Chr5	3500573	C-G	Homo	INTRON
SBS	Chr5	11674740	A-T	Hetero	INTERGENIC
SBS	Chr5	11674741	C-T	Hetero	INTERGENIC
SBS	Chr6	1488810	C-A	Hetero	INTERGENIC
SBS	Chr6	15101204	C-A	Hetero	INTERGENIC
SBS	Chr6	25301724	T-C	Hetero	SYNONYMOUS_CODING
SBS	Chr6	25301732	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g224300
SBS	Chr7	2349015	A-G	Hetero	INTERGENIC
SBS	Chr7	5604865	C-T	Hetero	INTERGENIC
SBS	Chr7	6594257	C-T	Hetero	INTERGENIC
SBS	Chr7	14798054	T-A	Hetero	INTERGENIC
SBS	Chr8	19079216	C-G	Homo	INTERGENIC
SBS	Chr8	22610872	C-T	Hetero	INTRON
SBS	Chr8	25555211	A-T	Homo	STOP_GAINED	OsKitaake08g201700
SBS	Chr9	3145602	A-G	Homo	INTERGENIC
SBS	Chr9	12508343	C-T	Hetero	INTERGENIC
SBS	Chr9	22211797	A-T	Hetero	INTERGENIC
SBS	Chr10	3880517	A-G	Hetero	INTERGENIC
SBS	Chr10	9100375	C-T	Hetero	INTERGENIC
SBS	Chr10	9997713	T-C	Hetero	INTERGENIC
SBS	Chr10	16042366	T-A	Hetero	INTRON
SBS	Chr10	16042367	C-T	Hetero	INTRON
SBS	Chr11	8728987	C-T	Hetero	INTERGENIC
SBS	Chr12	14732987	C-G	Hetero	INTERGENIC
SBS	Chr12	14947105	G-C	Hetero	INTERGENIC
SBS	Chr12	20515193	C-A	Hetero	INTERGENIC
SBS	Chr12	24673862	T-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	524001	1004000	479999	100
Deletion	Chr9	2030274	2030284	10
Deletion	Chr5	2039004	2039006	2
Deletion	Chr6	2074564	2074574	10
Deletion	Chr6	3025634	3025640	6
Deletion	Chr2	4939584	4939593	9
Deletion	Chr9	6622962	6622983	21
Deletion	Chr6	8505980	8505981	1
Deletion	Chr3	9291986	9291987	1
Deletion	Chr10	12769403	12769405	2
Deletion	Chr1	14881151	14881157	6
Deletion	Chr6	15617001	15690000	72999	2
Deletion	Chr2	15636830	15636845	15
Deletion	Chr5	16569487	16569488	1
Deletion	Chr11	17598106	17598108	2
Deletion	Chr11	18061348	18061361	13
Deletion	Chr1	19311956	19311964	8
Deletion	Chr2	20950259	20950266	7
Deletion	Chr4	21306749	21306750	1
Deletion	Chr11	23173815	23173817	2
Deletion	Chr12	27056849	27056864	15
Deletion	Chr8	27241016	27241018	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	4454923	4681486	OsKitaake11g059700
Inversion	Chr7	6594497	6760947	OsKitaake07g077600
Inversion	Chr7	6594498	6760955	OsKitaake07g077600

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes