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Mutant Information

Mutant Name	FN723-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN723-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000014 (Panicle Weight) = Low (Between 25% and 74%) TO:0000207 (Plant height) = Normal (Between 75% and 125%) TO:0000445 (Seed Number) = Normal (Between 75% and 125%) TO:0000639 (Seed fertility) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 39

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 18614241 G-A Homo INTERGENIC
SBS Chr1 19786035 G-C Hetero INTERGENIC
SBS Chr1 21166429 T-C Homo INTERGENIC
SBS Chr1 25903241 T-G Hetero INTERGENIC
SBS Chr1 30859798 T-C Hetero UTR_3_PRIME
SBS Chr1 34910253 G-A Hetero INTERGENIC
SBS Chr1 34910254 T-A Hetero INTERGENIC
SBS Chr1 43598858 T-A Hetero INTERGENIC
SBS Chr2 4476372 C-T Homo INTERGENIC
SBS Chr2 7499426 G-A Hetero INTERGENIC
SBS Chr2 16703081 T-C Hetero INTERGENIC
SBS Chr2 18178700 T-C Hetero INTERGENIC
SBS Chr2 21512151 G-T Hetero INTERGENIC
SBS Chr2 21512152 A-T Hetero INTERGENIC
SBS Chr2 35797673 G-A Homo NON_SYNONYMOUS_CODING OsKitaake02g376800
SBS Chr3 20461008 A-G Hetero INTERGENIC
SBS Chr3 23173057 T-C Hetero INTERGENIC
SBS Chr3 23229495 A-G Hetero INTERGENIC
SBS Chr3 26852700 T-G Hetero UTR_5_PRIME
SBS Chr3 31935591 C-T Hetero INTRON
SBS Chr4 9659636 G-C Homo INTERGENIC
SBS Chr4 15417047 A-G Hetero INTERGENIC
SBS Chr4 32729443 C-T Homo INTERGENIC
SBS Chr5 5863704 C-T Hetero INTERGENIC
SBS Chr6 17427352 C-G Homo UTR_3_PRIME
SBS Chr6 18298329 C-T Hetero INTERGENIC
SBS Chr7 1928243 T-G Hetero INTERGENIC
SBS Chr7 8907674 T-C Homo SYNONYMOUS_CODING
SBS Chr7 9004426 T-C Homo INTERGENIC
SBS Chr8 6726123 C-G Hetero INTERGENIC
SBS Chr9 958954 G-A Hetero INTERGENIC
SBS Chr9 14727600 C-T Hetero INTERGENIC
SBS Chr10 12713164 G-A Homo INTERGENIC
SBS Chr10 23895763 C-G Homo NON_SYNONYMOUS_CODING OsKitaake10g206000
SBS Chr10 24016088 C-T Homo INTRON
SBS Chr11 1427224 G-T Homo INTERGENIC
SBS Chr11 18415663 G-A Hetero INTERGENIC
SBS Chr11 18415664 G-T Hetero INTERGENIC
SBS Chr12 10746294 C-T Homo INTERGENIC

Deletions: 26

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 1962558 1962559 1
Deletion Chr5 2944083 2944086 3
Deletion Chr4 4165949 4165954 5
Deletion Chr4 4198364 4198366 2 OsKitaake04g020500
Deletion Chr4 5704001 5728000 23999
Deletion Chr2 7240466 7240468 2
Deletion Chr10 12273001 12456000 182999 22
Deletion Chr11 14506001 14729000 222999 12
Deletion Chr11 14745001 14951000 205999 10
Deletion Chr1 14911923 14911932 9
Deletion Chr10 15373278 15373279 1
Deletion Chr3 15568180 15568181 1
Deletion Chr6 16138059 16138061 2
Deletion Chr5 16528763 16528765 2
Deletion Chr6 17214141 17214142 1
Deletion Chr10 17614001 17795000 180999 24
Deletion Chr10 18070001 18504000 433999 40
Deletion Chr1 19785040 19785053 13
Deletion Chr1 19822094 19822095 1
Deletion Chr2 20558904 20558907 3
Deletion Chr7 21029001 21166000 136999 15
Deletion Chr1 21180980 21180985 5
Deletion Chr1 24745668 24745670 2
Deletion Chr7 27936061 27936068 7
Deletion Chr1 29172556 29172557 1 OsKitaake01g283900
Deletion Chr3 37520169 37520170 1

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 24050299 24050302 2
Insertion Chr7 8679241 8679243 1
Insertion Chr11 20034084 20034087 2
Insertion Chr9 2754472 2754474 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 14948247 14949739 OsKitaake11g123101
Inversion Chr10 15414302 15414639

Translocations: 9

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 465238 Chr2 27539342
Translocation Chr11 468221 Chr2 27539345
Translocation Chr7 6002730 Chr3 23295387 2
Translocation Chr7 6003149 Chr3 23295407 2
Translocation Chr9 10028135 Chr7 5793254 OsKitaake09g061000
Translocation Chr11 13931051 Chr10 8623976
Translocation Chr11 14506099 Chr10 5314453
Translocation Chr10 23534437 Chr7 5793553 OsKitaake10g201300
Translocation Chr10 23534454 Chr7 5793254 OsKitaake10g201300

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	18614241	G-A	Homo	INTERGENIC
SBS	Chr1	19786035	G-C	Hetero	INTERGENIC
SBS	Chr1	21166429	T-C	Homo	INTERGENIC
SBS	Chr1	25903241	T-G	Hetero	INTERGENIC
SBS	Chr1	30859798	T-C	Hetero	UTR_3_PRIME
SBS	Chr1	34910253	G-A	Hetero	INTERGENIC
SBS	Chr1	34910254	T-A	Hetero	INTERGENIC
SBS	Chr1	43598858	T-A	Hetero	INTERGENIC
SBS	Chr2	4476372	C-T	Homo	INTERGENIC
SBS	Chr2	7499426	G-A	Hetero	INTERGENIC
SBS	Chr2	16703081	T-C	Hetero	INTERGENIC
SBS	Chr2	18178700	T-C	Hetero	INTERGENIC
SBS	Chr2	21512151	G-T	Hetero	INTERGENIC
SBS	Chr2	21512152	A-T	Hetero	INTERGENIC
SBS	Chr2	35797673	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g376800
SBS	Chr3	20461008	A-G	Hetero	INTERGENIC
SBS	Chr3	23173057	T-C	Hetero	INTERGENIC
SBS	Chr3	23229495	A-G	Hetero	INTERGENIC
SBS	Chr3	26852700	T-G	Hetero	UTR_5_PRIME
SBS	Chr3	31935591	C-T	Hetero	INTRON
SBS	Chr4	9659636	G-C	Homo	INTERGENIC
SBS	Chr4	15417047	A-G	Hetero	INTERGENIC
SBS	Chr4	32729443	C-T	Homo	INTERGENIC
SBS	Chr5	5863704	C-T	Hetero	INTERGENIC
SBS	Chr6	17427352	C-G	Homo	UTR_3_PRIME
SBS	Chr6	18298329	C-T	Hetero	INTERGENIC
SBS	Chr7	1928243	T-G	Hetero	INTERGENIC
SBS	Chr7	8907674	T-C	Homo	SYNONYMOUS_CODING
SBS	Chr7	9004426	T-C	Homo	INTERGENIC
SBS	Chr8	6726123	C-G	Hetero	INTERGENIC
SBS	Chr9	958954	G-A	Hetero	INTERGENIC
SBS	Chr9	14727600	C-T	Hetero	INTERGENIC
SBS	Chr10	12713164	G-A	Homo	INTERGENIC
SBS	Chr10	23895763	C-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake10g206000
SBS	Chr10	24016088	C-T	Homo	INTRON
SBS	Chr11	1427224	G-T	Homo	INTERGENIC
SBS	Chr11	18415663	G-A	Hetero	INTERGENIC
SBS	Chr11	18415664	G-T	Hetero	INTERGENIC
SBS	Chr12	10746294	C-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	1962558	1962559	1
Deletion	Chr5	2944083	2944086	3
Deletion	Chr4	4165949	4165954	5
Deletion	Chr4	4198364	4198366	2	OsKitaake04g020500
Deletion	Chr4	5704001	5728000	23999
Deletion	Chr2	7240466	7240468	2
Deletion	Chr10	12273001	12456000	182999	22
Deletion	Chr11	14506001	14729000	222999	12
Deletion	Chr11	14745001	14951000	205999	10
Deletion	Chr1	14911923	14911932	9
Deletion	Chr10	15373278	15373279	1
Deletion	Chr3	15568180	15568181	1
Deletion	Chr6	16138059	16138061	2
Deletion	Chr5	16528763	16528765	2
Deletion	Chr6	17214141	17214142	1
Deletion	Chr10	17614001	17795000	180999	24
Deletion	Chr10	18070001	18504000	433999	40
Deletion	Chr1	19785040	19785053	13
Deletion	Chr1	19822094	19822095	1
Deletion	Chr2	20558904	20558907	3
Deletion	Chr7	21029001	21166000	136999	15
Deletion	Chr1	21180980	21180985	5
Deletion	Chr1	24745668	24745670	2
Deletion	Chr7	27936061	27936068	7
Deletion	Chr1	29172556	29172557	1	OsKitaake01g283900
Deletion	Chr3	37520169	37520170	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	14948247	14949739	OsKitaake11g123101
Inversion	Chr10	15414302	15414639

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes