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Mutant Information

Mutant Name	FN724-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN724-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 40

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 19219965 A-G Hetero INTERGENIC
SBS Chr1 23891270 G-A Hetero INTERGENIC
SBS Chr1 26211157 C-T Hetero INTERGENIC
SBS Chr1 41788949 C-T Hetero INTRON
SBS Chr2 1258254 A-T Hetero INTERGENIC
SBS Chr2 22055418 C-T Hetero INTERGENIC
SBS Chr2 26838042 T-G Hetero INTERGENIC
SBS Chr2 35158605 G-A Hetero UTR_5_PRIME
SBS Chr3 506266 C-T Hetero INTERGENIC
SBS Chr3 10121719 C-T Homo INTERGENIC
SBS Chr3 26569121 G-T Hetero INTERGENIC
SBS Chr3 31380578 A-G Hetero INTERGENIC
SBS Chr4 17172413 T-C Hetero INTERGENIC
SBS Chr4 24852057 G-T Hetero INTERGENIC
SBS Chr4 31572013 C-A Hetero SYNONYMOUS_CODING
SBS Chr6 17090239 C-T Hetero INTERGENIC
SBS Chr7 8316640 C-T Hetero INTERGENIC
SBS Chr7 8471256 G-A Hetero INTERGENIC
SBS Chr7 10258741 A-G Hetero INTERGENIC
SBS Chr7 18924593 T-C Hetero INTERGENIC
SBS Chr7 19037345 C-T Hetero INTERGENIC
SBS Chr7 23972006 T-G Homo UTR_5_PRIME
SBS Chr7 25002096 C-A Homo INTERGENIC
SBS Chr8 1055340 T-A Hetero INTRON
SBS Chr8 4021077 A-C Hetero INTERGENIC
SBS Chr8 9023869 C-T Homo INTERGENIC
SBS Chr8 12981735 C-T Homo INTERGENIC
SBS Chr8 14447847 A-C Homo INTERGENIC
SBS Chr9 2988144 G-A Hetero START_GAINED
SBS Chr9 12429807 T-A Hetero INTERGENIC
SBS Chr9 12429808 A-T Hetero INTERGENIC
SBS Chr10 5350968 A-G Homo INTERGENIC
SBS Chr10 16162500 C-G Homo NON_SYNONYMOUS_CODING OsKitaake10g108300
SBS Chr10 19453518 G-A Hetero INTERGENIC
SBS Chr11 7046621 C-A Hetero INTERGENIC
SBS Chr11 19744330 C-G Hetero INTERGENIC
SBS Chr11 28520273 T-C Homo INTRON
SBS Chr12 17943918 G-A Hetero INTERGENIC
SBS Chr12 21039149 A-T Homo INTERGENIC
SBS Chr12 22700505 C-T Hetero INTRON

Deletions: 18

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 1528495 1528504 9
Deletion Chr4 1583465 1583469 4
Deletion Chr6 2841753 2841760 7
Deletion Chr9 4389411 4389419 8
Deletion Chr2 5850149 5850152 3
Deletion Chr1 7689055 7689063 8
Deletion Chr2 7984051 7984062 11
Deletion Chr6 9795778 9795795 17
Deletion Chr7 14223047 14223049 2 OsKitaake07g122600
Deletion Chr1 16930001 17010000 79999 4
Deletion Chr1 18014635 18014720 85
Deletion Chr5 18755197 18755222 25
Deletion Chr3 20214417 20214424 7 OsKitaake03g230500
Deletion Chr4 20494676 20494679 3
Deletion Chr9 22055940 22055944 4
Deletion Chr3 24549206 24549208 2 OsKitaake03g262700
Deletion Chr6 27783346 27783350 4
Deletion Chr7 28231492 28231493 1

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 8617708 8617711 2
Insertion Chr8 29297879 29297882 2

Inversions: 7

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 2274185 2375428
Inversion Chr8 13363224 14023524
Inversion Chr8 13370829 14023525 OsKitaake08g110260
Inversion Chr4 22189789 22301941
Inversion Chr4 22189791 22301949
Inversion Chr3 37243655 37709737 2
Inversion Chr3 37243661 37709751 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	19219965	A-G	Hetero	INTERGENIC
SBS	Chr1	23891270	G-A	Hetero	INTERGENIC
SBS	Chr1	26211157	C-T	Hetero	INTERGENIC
SBS	Chr1	41788949	C-T	Hetero	INTRON
SBS	Chr2	1258254	A-T	Hetero	INTERGENIC
SBS	Chr2	22055418	C-T	Hetero	INTERGENIC
SBS	Chr2	26838042	T-G	Hetero	INTERGENIC
SBS	Chr2	35158605	G-A	Hetero	UTR_5_PRIME
SBS	Chr3	506266	C-T	Hetero	INTERGENIC
SBS	Chr3	10121719	C-T	Homo	INTERGENIC
SBS	Chr3	26569121	G-T	Hetero	INTERGENIC
SBS	Chr3	31380578	A-G	Hetero	INTERGENIC
SBS	Chr4	17172413	T-C	Hetero	INTERGENIC
SBS	Chr4	24852057	G-T	Hetero	INTERGENIC
SBS	Chr4	31572013	C-A	Hetero	SYNONYMOUS_CODING
SBS	Chr6	17090239	C-T	Hetero	INTERGENIC
SBS	Chr7	8316640	C-T	Hetero	INTERGENIC
SBS	Chr7	8471256	G-A	Hetero	INTERGENIC
SBS	Chr7	10258741	A-G	Hetero	INTERGENIC
SBS	Chr7	18924593	T-C	Hetero	INTERGENIC
SBS	Chr7	19037345	C-T	Hetero	INTERGENIC
SBS	Chr7	23972006	T-G	Homo	UTR_5_PRIME
SBS	Chr7	25002096	C-A	Homo	INTERGENIC
SBS	Chr8	1055340	T-A	Hetero	INTRON
SBS	Chr8	4021077	A-C	Hetero	INTERGENIC
SBS	Chr8	9023869	C-T	Homo	INTERGENIC
SBS	Chr8	12981735	C-T	Homo	INTERGENIC
SBS	Chr8	14447847	A-C	Homo	INTERGENIC
SBS	Chr9	2988144	G-A	Hetero	START_GAINED
SBS	Chr9	12429807	T-A	Hetero	INTERGENIC
SBS	Chr9	12429808	A-T	Hetero	INTERGENIC
SBS	Chr10	5350968	A-G	Homo	INTERGENIC
SBS	Chr10	16162500	C-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake10g108300
SBS	Chr10	19453518	G-A	Hetero	INTERGENIC
SBS	Chr11	7046621	C-A	Hetero	INTERGENIC
SBS	Chr11	19744330	C-G	Hetero	INTERGENIC
SBS	Chr11	28520273	T-C	Homo	INTRON
SBS	Chr12	17943918	G-A	Hetero	INTERGENIC
SBS	Chr12	21039149	A-T	Homo	INTERGENIC
SBS	Chr12	22700505	C-T	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	1528495	1528504	9
Deletion	Chr4	1583465	1583469	4
Deletion	Chr6	2841753	2841760	7
Deletion	Chr9	4389411	4389419	8
Deletion	Chr2	5850149	5850152	3
Deletion	Chr1	7689055	7689063	8
Deletion	Chr2	7984051	7984062	11
Deletion	Chr6	9795778	9795795	17
Deletion	Chr7	14223047	14223049	2	OsKitaake07g122600
Deletion	Chr1	16930001	17010000	79999	4
Deletion	Chr1	18014635	18014720	85
Deletion	Chr5	18755197	18755222	25
Deletion	Chr3	20214417	20214424	7	OsKitaake03g230500
Deletion	Chr4	20494676	20494679	3
Deletion	Chr9	22055940	22055944	4
Deletion	Chr3	24549206	24549208	2	OsKitaake03g262700
Deletion	Chr6	27783346	27783350	4
Deletion	Chr7	28231492	28231493	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	2274185	2375428
Inversion	Chr8	13363224	14023524
Inversion	Chr8	13370829	14023525	OsKitaake08g110260
Inversion	Chr4	22189789	22301941
Inversion	Chr4	22189791	22301949
Inversion	Chr3	37243655	37709737	2
Inversion	Chr3	37243661	37709751	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes