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Mutant Information

Mutant Name	FN726-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN726-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 24

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr2 14208594 G-A Hetero INTERGENIC
SBS Chr2 17030980 C-G Hetero INTERGENIC
SBS Chr2 17510249 G-A Hetero INTERGENIC
SBS Chr4 12171847 G-A Hetero INTERGENIC
SBS Chr4 15822728 C-T Hetero SYNONYMOUS_CODING
SBS Chr4 17650031 A-G Hetero INTRON
SBS Chr4 24788370 A-G Hetero INTRON
SBS Chr4 34353692 C-T Homo INTERGENIC
SBS Chr5 1701280 G-A Hetero SYNONYMOUS_CODING
SBS Chr5 18193085 C-T Hetero INTERGENIC
SBS Chr6 7738868 G-T Hetero INTERGENIC
SBS Chr6 15474097 T-G Hetero INTERGENIC
SBS Chr6 19776959 G-A Hetero INTERGENIC
SBS Chr6 21824453 T-A Hetero UTR_3_PRIME
SBS Chr6 21824454 T-A Hetero UTR_3_PRIME
SBS Chr6 30758405 T-A Homo INTERGENIC
SBS Chr7 29307250 T-C Hetero UTR_3_PRIME
SBS Chr8 12249673 C-T Hetero INTERGENIC
SBS Chr8 17978164 C-G Hetero INTERGENIC
SBS Chr9 8851245 G-C Homo INTERGENIC
SBS Chr9 13414785 G-A Homo INTERGENIC
SBS Chr11 10988746 G-A Homo INTERGENIC
SBS Chr12 4296032 A-C Hetero UTR_3_PRIME
SBS Chr12 16229664 C-A Hetero INTERGENIC

Deletions: 22

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 21148 21149 1
Deletion Chr1 2801226 2801227 1
Deletion Chr11 3195801 3195807 6
Deletion Chr2 4599718 4599724 6
Deletion Chr3 5098160 5098171 11
Deletion Chr2 5199408 5199409 1
Deletion Chr8 5702633 5702636 3
Deletion Chr6 6106395 6106397 2
Deletion Chr7 10221431 10221438 7
Deletion Chr8 11963120 11963128 8
Deletion Chr6 14650915 14650916 1
Deletion Chr10 15049301 15049303 2
Deletion Chr3 15147985 15147992 7 OsKitaake03g196300
Deletion Chr4 16626398 16626400 2
Deletion Chr3 22141947 22141948 1
Deletion Chr2 22217109 22217110 1
Deletion Chr11 22263678 22263687 9
Deletion Chr12 22918591 22918598 7
Deletion Chr10 23324604 23324609 5
Deletion Chr11 26352447 26352455 8
Deletion Chr8 28781097 28781100 3
Deletion Chr1 41208368 41208371 3

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 3866420 3866423 2
Insertion Chr3 6938749 6938752 2
Insertion Chr4 14260248 14260251 2
Insertion Chr7 3052855 3052858 2
Insertion Chr7 14040641 14040649 7

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 13311939 13354718
Inversion Chr10 13311945 13354775

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 15542836 Chr1 16177158
Translocation Chr12 15543039 Chr1 16177162
Translocation Chr11 24851168 Chr9 3242615
Translocation Chr11 24851199 Chr9 3242888

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr2	14208594	G-A	Hetero	INTERGENIC
SBS	Chr2	17030980	C-G	Hetero	INTERGENIC
SBS	Chr2	17510249	G-A	Hetero	INTERGENIC
SBS	Chr4	12171847	G-A	Hetero	INTERGENIC
SBS	Chr4	15822728	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr4	17650031	A-G	Hetero	INTRON
SBS	Chr4	24788370	A-G	Hetero	INTRON
SBS	Chr4	34353692	C-T	Homo	INTERGENIC
SBS	Chr5	1701280	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr5	18193085	C-T	Hetero	INTERGENIC
SBS	Chr6	7738868	G-T	Hetero	INTERGENIC
SBS	Chr6	15474097	T-G	Hetero	INTERGENIC
SBS	Chr6	19776959	G-A	Hetero	INTERGENIC
SBS	Chr6	21824453	T-A	Hetero	UTR_3_PRIME
SBS	Chr6	21824454	T-A	Hetero	UTR_3_PRIME
SBS	Chr6	30758405	T-A	Homo	INTERGENIC
SBS	Chr7	29307250	T-C	Hetero	UTR_3_PRIME
SBS	Chr8	12249673	C-T	Hetero	INTERGENIC
SBS	Chr8	17978164	C-G	Hetero	INTERGENIC
SBS	Chr9	8851245	G-C	Homo	INTERGENIC
SBS	Chr9	13414785	G-A	Homo	INTERGENIC
SBS	Chr11	10988746	G-A	Homo	INTERGENIC
SBS	Chr12	4296032	A-C	Hetero	UTR_3_PRIME
SBS	Chr12	16229664	C-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	21148	21149	1
Deletion	Chr1	2801226	2801227	1
Deletion	Chr11	3195801	3195807	6
Deletion	Chr2	4599718	4599724	6
Deletion	Chr3	5098160	5098171	11
Deletion	Chr2	5199408	5199409	1
Deletion	Chr8	5702633	5702636	3
Deletion	Chr6	6106395	6106397	2
Deletion	Chr7	10221431	10221438	7
Deletion	Chr8	11963120	11963128	8
Deletion	Chr6	14650915	14650916	1
Deletion	Chr10	15049301	15049303	2
Deletion	Chr3	15147985	15147992	7	OsKitaake03g196300
Deletion	Chr4	16626398	16626400	2
Deletion	Chr3	22141947	22141948	1
Deletion	Chr2	22217109	22217110	1
Deletion	Chr11	22263678	22263687	9
Deletion	Chr12	22918591	22918598	7
Deletion	Chr10	23324604	23324609	5
Deletion	Chr11	26352447	26352455	8
Deletion	Chr8	28781097	28781100	3
Deletion	Chr1	41208368	41208371	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	13311939	13354718
Inversion	Chr10	13311945	13354775

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes