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Mutant Information

Mutant Name	FN727-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN727-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 32

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 21735282 A-T Homo INTRON
SBS Chr1 21792238 C-T Hetero INTERGENIC
SBS Chr1 24230109 T-G Hetero INTERGENIC
SBS Chr1 26860188 T-C Homo INTRON
SBS Chr2 1580534 G-T Homo INTERGENIC
SBS Chr2 6089621 T-A Homo INTERGENIC
SBS Chr2 24961462 C-A Hetero INTERGENIC
SBS Chr2 32462964 G-A Hetero INTRON
SBS Chr2 33155664 G-A Hetero UTR_5_PRIME
SBS Chr3 20669497 G-A Hetero INTERGENIC
SBS Chr3 22685544 T-C Hetero INTRON
SBS Chr3 22685547 C-A Hetero INTRON
SBS Chr3 26218409 G-A Hetero INTERGENIC
SBS Chr4 972086 T-C Homo INTERGENIC
SBS Chr4 12764198 G-T Homo INTRON
SBS Chr4 26071837 C-T Homo INTERGENIC
SBS Chr4 28700555 C-T Homo INTERGENIC
SBS Chr4 33538026 G-A Hetero INTERGENIC
SBS Chr4 34499201 C-T Hetero INTERGENIC
SBS Chr5 182474 C-A Hetero INTRON
SBS Chr7 9119956 C-T Hetero INTERGENIC
SBS Chr7 9449276 T-A Hetero INTERGENIC
SBS Chr8 2657323 G-C Homo INTERGENIC
SBS Chr8 8272752 T-A Homo INTERGENIC
SBS Chr8 12691903 T-C Homo INTERGENIC
SBS Chr8 12896348 T-C Homo INTERGENIC
SBS Chr9 1130555 T-A Hetero INTRON
SBS Chr10 543825 T-A Homo INTERGENIC
SBS Chr10 7180464 G-T Homo SYNONYMOUS_CODING
SBS Chr12 2114032 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake12g033400
SBS Chr12 4104211 C-T Hetero INTERGENIC
SBS Chr12 18433811 G-T Homo INTERGENIC

Deletions: 23

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 219001 263000 43999 7
Deletion Chr7 2795134 2795136 2
Deletion Chr2 5975247 5975250 3
Deletion Chr6 7799654 7799660 6
Deletion Chr3 8137001 8144000 6999 2
Deletion Chr11 10092384 10092396 12
Deletion Chr4 11297361 11297378 17
Deletion Chr2 13324041 13324049 8
Deletion Chr4 13427499 13427507 8
Deletion Chr8 16516132 16516143 11
Deletion Chr4 19545010 19545011 1 OsKitaake04g101000
Deletion Chr3 19681001 19738000 56999
Deletion Chr4 19980891 19980893 2
Deletion Chr1 20191743 20191748 5
Deletion Chr7 21434295 21434300 5
Deletion Chr11 22794188 22794190 2 OsKitaake11g180700
Deletion Chr1 22886136 22886140 4
Deletion Chr12 23188489 23188503 14
Deletion Chr4 25939063 25939072 9
Deletion Chr1 26665315 26665317 2
Deletion Chr2 32467001 32495000 27999 OsKitaake02g332400
Deletion Chr2 32497001 32541000 43999
Deletion Chr2 33360552 33360555 3

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 23342413 23342416 2
Insertion Chr8 17119630 17119633 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 22702478 23219002 OsKitaake11g184700
Inversion Chr11 23024121 23218995 2

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 19485516 Chr1 23934895 OsKitaake01g230100
Translocation Chr4 33628240 Chr3 8144402
Translocation Chr4 33628382 Chr3 8137011 OsKitaake03g112700

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	21735282	A-T	Homo	INTRON
SBS	Chr1	21792238	C-T	Hetero	INTERGENIC
SBS	Chr1	24230109	T-G	Hetero	INTERGENIC
SBS	Chr1	26860188	T-C	Homo	INTRON
SBS	Chr2	1580534	G-T	Homo	INTERGENIC
SBS	Chr2	6089621	T-A	Homo	INTERGENIC
SBS	Chr2	24961462	C-A	Hetero	INTERGENIC
SBS	Chr2	32462964	G-A	Hetero	INTRON
SBS	Chr2	33155664	G-A	Hetero	UTR_5_PRIME
SBS	Chr3	20669497	G-A	Hetero	INTERGENIC
SBS	Chr3	22685544	T-C	Hetero	INTRON
SBS	Chr3	22685547	C-A	Hetero	INTRON
SBS	Chr3	26218409	G-A	Hetero	INTERGENIC
SBS	Chr4	972086	T-C	Homo	INTERGENIC
SBS	Chr4	12764198	G-T	Homo	INTRON
SBS	Chr4	26071837	C-T	Homo	INTERGENIC
SBS	Chr4	28700555	C-T	Homo	INTERGENIC
SBS	Chr4	33538026	G-A	Hetero	INTERGENIC
SBS	Chr4	34499201	C-T	Hetero	INTERGENIC
SBS	Chr5	182474	C-A	Hetero	INTRON
SBS	Chr7	9119956	C-T	Hetero	INTERGENIC
SBS	Chr7	9449276	T-A	Hetero	INTERGENIC
SBS	Chr8	2657323	G-C	Homo	INTERGENIC
SBS	Chr8	8272752	T-A	Homo	INTERGENIC
SBS	Chr8	12691903	T-C	Homo	INTERGENIC
SBS	Chr8	12896348	T-C	Homo	INTERGENIC
SBS	Chr9	1130555	T-A	Hetero	INTRON
SBS	Chr10	543825	T-A	Homo	INTERGENIC
SBS	Chr10	7180464	G-T	Homo	SYNONYMOUS_CODING
SBS	Chr12	2114032	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g033400
SBS	Chr12	4104211	C-T	Hetero	INTERGENIC
SBS	Chr12	18433811	G-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	219001	263000	43999	7
Deletion	Chr7	2795134	2795136	2
Deletion	Chr2	5975247	5975250	3
Deletion	Chr6	7799654	7799660	6
Deletion	Chr3	8137001	8144000	6999	2
Deletion	Chr11	10092384	10092396	12
Deletion	Chr4	11297361	11297378	17
Deletion	Chr2	13324041	13324049	8
Deletion	Chr4	13427499	13427507	8
Deletion	Chr8	16516132	16516143	11
Deletion	Chr4	19545010	19545011	1	OsKitaake04g101000
Deletion	Chr3	19681001	19738000	56999
Deletion	Chr4	19980891	19980893	2
Deletion	Chr1	20191743	20191748	5
Deletion	Chr7	21434295	21434300	5
Deletion	Chr11	22794188	22794190	2	OsKitaake11g180700
Deletion	Chr1	22886136	22886140	4
Deletion	Chr12	23188489	23188503	14
Deletion	Chr4	25939063	25939072	9
Deletion	Chr1	26665315	26665317	2
Deletion	Chr2	32467001	32495000	27999	OsKitaake02g332400
Deletion	Chr2	32497001	32541000	43999
Deletion	Chr2	33360552	33360555	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	22702478	23219002	OsKitaake11g184700
Inversion	Chr11	23024121	23218995	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes