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Mutant Information

Mutant Name	FN728-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN728-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 42

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 4053091 C-T Hetero UTR_5_PRIME
SBS Chr1 4053092 T-A Hetero START_GAINED
SBS Chr1 4053094 G-C Hetero UTR_5_PRIME
SBS Chr1 23052954 G-A Homo INTERGENIC
SBS Chr1 25810089 C-T Hetero INTERGENIC
SBS Chr1 33759355 C-T Hetero INTERGENIC
SBS Chr1 38562387 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake01g411900
SBS Chr2 22346554 C-T Hetero INTERGENIC
SBS Chr2 23123691 G-T Hetero INTERGENIC
SBS Chr3 2562684 C-T Hetero SYNONYMOUS_CODING
SBS Chr3 20404126 C-T Hetero INTERGENIC
SBS Chr3 29334771 G-A Homo SYNONYMOUS_CODING
SBS Chr4 4931514 G-A Hetero INTERGENIC
SBS Chr4 17322102 G-A Hetero INTERGENIC
SBS Chr4 31938655 G-A Hetero INTERGENIC
SBS Chr5 20839584 T-A Hetero INTERGENIC
SBS Chr5 22742583 G-A Hetero INTERGENIC
SBS Chr5 25231253 G-T Hetero INTERGENIC
SBS Chr6 7316436 G-A Hetero INTERGENIC
SBS Chr6 11332190 C-T Hetero INTERGENIC
SBS Chr6 11332191 C-T Hetero INTERGENIC
SBS Chr6 13173837 A-G Hetero INTERGENIC
SBS Chr6 16020173 C-T Hetero INTRON
SBS Chr6 21760854 T-C Hetero INTERGENIC
SBS Chr6 26456517 T-C Homo INTERGENIC
SBS Chr7 2684661 T-A Hetero UTR_5_PRIME
SBS Chr7 25187242 C-T Hetero INTERGENIC
SBS Chr8 8069875 A-C Homo INTERGENIC
SBS Chr8 8254205 C-T Homo INTERGENIC
SBS Chr8 28221136 G-A Hetero SYNONYMOUS_CODING
SBS Chr8 28824797 A-T Hetero INTRON
SBS Chr10 5426751 A-T Hetero INTERGENIC
SBS Chr10 17898601 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake10g124800
SBS Chr10 19460759 C-A Homo INTERGENIC
SBS Chr11 1239063 C-T Hetero UTR_5_PRIME
SBS Chr11 1239064 C-T Hetero UTR_5_PRIME
SBS Chr11 20955369 C-T Hetero INTERGENIC
SBS Chr12 2085423 G-A Homo INTERGENIC
SBS Chr12 4607715 A-T Hetero INTERGENIC
SBS Chr12 8953479 G-A Hetero INTERGENIC
SBS Chr12 16352186 C-T Hetero INTERGENIC
SBS Chr12 19849771 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake12g148200

Deletions: 25

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 3250833 3250834 1
Deletion Chr1 4467010 4467015 5 OsKitaake01g059500
Deletion Chr1 7408974 7408995 21 OsKitaake01g092700
Deletion Chr9 8206037 8206040 3
Deletion Chr11 8802370 8802371 1
Deletion Chr11 10823809 10823815 6
Deletion Chr3 11328050 11328061 11 OsKitaake03g155200
Deletion Chr3 11777677 11777682 5
Deletion Chr8 11884001 11884006 5
Deletion Chr10 14219012 14219013 1
Deletion Chr5 14407920 14407922 2
Deletion Chr7 16580032 16580043 11
Deletion Chr1 16868857 16868859 2
Deletion Chr5 18178540 18178563 23
Deletion Chr5 18195820 18195821 1
Deletion Chr3 18246743 18246745 2
Deletion Chr10 23009309 23009310 1
Deletion Chr4 25602494 25602496 2
Deletion Chr6 25910503 25910510 7 OsKitaake06g230800
Deletion Chr5 25944661 25944662 1
Deletion Chr4 26321420 26321421 1
Deletion Chr4 28541969 28541971 2
Deletion Chr2 31345373 31345377 4
Deletion Chr4 31649884 31649885 1
Deletion Chr4 36711426 36711427 1

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 26941185 26941188 2
Insertion Chr6 13707497 13707501 3

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4053091	C-T	Hetero	UTR_5_PRIME
SBS	Chr1	4053092	T-A	Hetero	START_GAINED
SBS	Chr1	4053094	G-C	Hetero	UTR_5_PRIME
SBS	Chr1	23052954	G-A	Homo	INTERGENIC
SBS	Chr1	25810089	C-T	Hetero	INTERGENIC
SBS	Chr1	33759355	C-T	Hetero	INTERGENIC
SBS	Chr1	38562387	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g411900
SBS	Chr2	22346554	C-T	Hetero	INTERGENIC
SBS	Chr2	23123691	G-T	Hetero	INTERGENIC
SBS	Chr3	2562684	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr3	20404126	C-T	Hetero	INTERGENIC
SBS	Chr3	29334771	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr4	4931514	G-A	Hetero	INTERGENIC
SBS	Chr4	17322102	G-A	Hetero	INTERGENIC
SBS	Chr4	31938655	G-A	Hetero	INTERGENIC
SBS	Chr5	20839584	T-A	Hetero	INTERGENIC
SBS	Chr5	22742583	G-A	Hetero	INTERGENIC
SBS	Chr5	25231253	G-T	Hetero	INTERGENIC
SBS	Chr6	7316436	G-A	Hetero	INTERGENIC
SBS	Chr6	11332190	C-T	Hetero	INTERGENIC
SBS	Chr6	11332191	C-T	Hetero	INTERGENIC
SBS	Chr6	13173837	A-G	Hetero	INTERGENIC
SBS	Chr6	16020173	C-T	Hetero	INTRON
SBS	Chr6	21760854	T-C	Hetero	INTERGENIC
SBS	Chr6	26456517	T-C	Homo	INTERGENIC
SBS	Chr7	2684661	T-A	Hetero	UTR_5_PRIME
SBS	Chr7	25187242	C-T	Hetero	INTERGENIC
SBS	Chr8	8069875	A-C	Homo	INTERGENIC
SBS	Chr8	8254205	C-T	Homo	INTERGENIC
SBS	Chr8	28221136	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr8	28824797	A-T	Hetero	INTRON
SBS	Chr10	5426751	A-T	Hetero	INTERGENIC
SBS	Chr10	17898601	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g124800
SBS	Chr10	19460759	C-A	Homo	INTERGENIC
SBS	Chr11	1239063	C-T	Hetero	UTR_5_PRIME
SBS	Chr11	1239064	C-T	Hetero	UTR_5_PRIME
SBS	Chr11	20955369	C-T	Hetero	INTERGENIC
SBS	Chr12	2085423	G-A	Homo	INTERGENIC
SBS	Chr12	4607715	A-T	Hetero	INTERGENIC
SBS	Chr12	8953479	G-A	Hetero	INTERGENIC
SBS	Chr12	16352186	C-T	Hetero	INTERGENIC
SBS	Chr12	19849771	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g148200

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	3250833	3250834	1
Deletion	Chr1	4467010	4467015	5	OsKitaake01g059500
Deletion	Chr1	7408974	7408995	21	OsKitaake01g092700
Deletion	Chr9	8206037	8206040	3
Deletion	Chr11	8802370	8802371	1
Deletion	Chr11	10823809	10823815	6
Deletion	Chr3	11328050	11328061	11	OsKitaake03g155200
Deletion	Chr3	11777677	11777682	5
Deletion	Chr8	11884001	11884006	5
Deletion	Chr10	14219012	14219013	1
Deletion	Chr5	14407920	14407922	2
Deletion	Chr7	16580032	16580043	11
Deletion	Chr1	16868857	16868859	2
Deletion	Chr5	18178540	18178563	23
Deletion	Chr5	18195820	18195821	1
Deletion	Chr3	18246743	18246745	2
Deletion	Chr10	23009309	23009310	1
Deletion	Chr4	25602494	25602496	2
Deletion	Chr6	25910503	25910510	7	OsKitaake06g230800
Deletion	Chr5	25944661	25944662	1
Deletion	Chr4	26321420	26321421	1
Deletion	Chr4	28541969	28541971	2
Deletion	Chr2	31345373	31345377	4
Deletion	Chr4	31649884	31649885	1
Deletion	Chr4	36711426	36711427	1

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes