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| Mutant Information |
|---|
| Mutant Name | FN729-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN729-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Phenotype |
|
| Variant Information |
|---|
Single base substitutions: 26
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 7403886 | T-A | Homo | INTERGENIC | |
| SBS | Chr1 | 13835304 | C-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 11809852 | G-A | Homo | INTRON | |
| SBS | Chr2 | 14931603 | C-A | Homo | INTERGENIC | |
| SBS | Chr2 | 20206473 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 22416748 | G-A | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr2 | 34255418 | T-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 12438383 | T-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 12923164 | T-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 24983387 | A-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 4344297 | C-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 4883095 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 34516419 | C-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 1010183 | A-G | Homo | INTRON | |
| SBS | Chr5 | 12170535 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 20261865 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 26565464 | T-C | Homo | INTERGENIC | |
| SBS | Chr6 | 8811998 | T-G | Homo | INTERGENIC | |
| SBS | Chr7 | 11728965 | T-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 1501817 | A-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 5516318 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 7010745 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 17091993 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 25350274 | T-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 1886521 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake12g029100 |
| SBS | Chr12 | 17690086 | T-A | Hetero | SPLICE_SITE_REGION |
Deletions: 10
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr4 | 499318 | 499319 | 1 | |
| Deletion | Chr12 | 8327979 | 8327981 | 2 | |
| Deletion | Chr6 | 9556267 | 9556285 | 18 | |
| Deletion | Chr5 | 10455839 | 10455840 | 1 | |
| Deletion | Chr11 | 12522263 | 12522264 | 1 | |
| Deletion | Chr6 | 14120523 | 14120524 | 1 | |
| Deletion | Chr5 | 19829986 | 19829987 | 1 | OsKitaake05g157500 |
| Deletion | Chr2 | 31459134 | 31459138 | 4 | |
| Deletion | Chr1 | 31766039 | 31766049 | 10 | |
| Deletion | Chr4 | 34862459 | 34862460 | 1 |
Inversions: 4
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr11 | 9538681 | 10472371 | |
| Inversion | Chr11 | 9538708 | 10472388 | |
| Inversion | Chr12 | 25420577 | 25625532 | OsKitaake12g208600 |
| Inversion | Chr12 | 25420578 | 25625530 | OsKitaake12g208600 |