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Mutant Information

Mutant Name	FN730-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN730-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 27

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5258332 C-T Homo INTRON
SBS Chr1 28435903 G-A Hetero INTERGENIC
SBS Chr2 17248969 G-A Hetero INTERGENIC
SBS Chr3 7865693 C-T Hetero STOP_GAINED OsKitaake03g109100
SBS Chr3 16410000 G-A Hetero INTERGENIC
SBS Chr3 19170370 A-T Homo INTERGENIC
SBS Chr3 26534793 C-T Hetero INTERGENIC
SBS Chr4 18856565 C-T Homo INTERGENIC
SBS Chr4 18856772 T-A Homo INTERGENIC
SBS Chr4 25265307 A-T Homo INTRON
SBS Chr5 17470945 C-T Hetero INTERGENIC
SBS Chr5 18186387 A-T Hetero INTERGENIC
SBS Chr6 23007546 T-C Hetero INTERGENIC
SBS Chr6 24800163 T-G Hetero NON_SYNONYMOUS_CODING OsKitaake06g220300
SBS Chr7 18303619 G-A Homo INTERGENIC
SBS Chr8 2086445 C-A Hetero INTERGENIC
SBS Chr8 12456371 T-A Hetero INTERGENIC
SBS Chr8 15465033 G-A Hetero INTERGENIC
SBS Chr8 19305279 C-A Homo INTERGENIC
SBS Chr9 7620082 G-A Homo INTERGENIC
SBS Chr9 10691361 A-T Hetero INTERGENIC
SBS Chr9 15411647 G-T Hetero INTERGENIC
SBS Chr10 1790291 T-A Hetero INTERGENIC
SBS Chr10 18870699 C-T Hetero INTERGENIC
SBS Chr10 19752716 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake10g146600
SBS Chr12 6042099 G-A Hetero INTERGENIC
SBS Chr12 10125293 G-A Hetero INTRON

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 1362737 1362738 1
Deletion Chr10 1979016 1979017 1
Deletion Chr9 2460244 2460251 7
Deletion Chr3 3409816 3409824 8
Deletion Chr10 4337690 4337691 1
Deletion Chr8 4899689 4899692 3
Deletion Chr1 5268946 5268947 1
Deletion Chr10 8096190 8096273 83
Deletion Chr12 11652227 11652538 311
Deletion Chr4 20813118 20813131 13
Deletion Chr4 21306720 21306729 9
Deletion Chr5 23435001 23476000 40999 6
Deletion Chr12 24055093 24055094 1
Deletion Chr5 25535944 25535949 5
Deletion Chr12 26403024 26403028 4
Deletion Chr8 29079001 29142000 62999 7
Deletion Chr4 34486871 34486874 3

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 19115359 19115362 2
Insertion Chr4 29716800 29716803 2
Insertion Chr10 8378292 8378295 2
Insertion Chr3 20033409 20033422 12

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 17395213 17405289
Inversion Chr5 17395224 17405297

Translocations: 7

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 77352 Chr5 23475880 OsKitaake05g204700
Translocation Chr8 79709 Chr5 23434710 OsKitaake05g196300
Translocation Chr9 4337176 Chr4 29349997
Translocation Chr9 4337524 Chr4 29349988 OsKitaake04g223500
Translocation Chr8 10952573 Chr3 13580976
Translocation Chr4 21135752 Chr1 13498150 2
Translocation Chr4 21136105 Chr1 13498142 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5258332	C-T	Homo	INTRON
SBS	Chr1	28435903	G-A	Hetero	INTERGENIC
SBS	Chr2	17248969	G-A	Hetero	INTERGENIC
SBS	Chr3	7865693	C-T	Hetero	STOP_GAINED	OsKitaake03g109100
SBS	Chr3	16410000	G-A	Hetero	INTERGENIC
SBS	Chr3	19170370	A-T	Homo	INTERGENIC
SBS	Chr3	26534793	C-T	Hetero	INTERGENIC
SBS	Chr4	18856565	C-T	Homo	INTERGENIC
SBS	Chr4	18856772	T-A	Homo	INTERGENIC
SBS	Chr4	25265307	A-T	Homo	INTRON
SBS	Chr5	17470945	C-T	Hetero	INTERGENIC
SBS	Chr5	18186387	A-T	Hetero	INTERGENIC
SBS	Chr6	23007546	T-C	Hetero	INTERGENIC
SBS	Chr6	24800163	T-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g220300
SBS	Chr7	18303619	G-A	Homo	INTERGENIC
SBS	Chr8	2086445	C-A	Hetero	INTERGENIC
SBS	Chr8	12456371	T-A	Hetero	INTERGENIC
SBS	Chr8	15465033	G-A	Hetero	INTERGENIC
SBS	Chr8	19305279	C-A	Homo	INTERGENIC
SBS	Chr9	7620082	G-A	Homo	INTERGENIC
SBS	Chr9	10691361	A-T	Hetero	INTERGENIC
SBS	Chr9	15411647	G-T	Hetero	INTERGENIC
SBS	Chr10	1790291	T-A	Hetero	INTERGENIC
SBS	Chr10	18870699	C-T	Hetero	INTERGENIC
SBS	Chr10	19752716	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g146600
SBS	Chr12	6042099	G-A	Hetero	INTERGENIC
SBS	Chr12	10125293	G-A	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	1362737	1362738	1
Deletion	Chr10	1979016	1979017	1
Deletion	Chr9	2460244	2460251	7
Deletion	Chr3	3409816	3409824	8
Deletion	Chr10	4337690	4337691	1
Deletion	Chr8	4899689	4899692	3
Deletion	Chr1	5268946	5268947	1
Deletion	Chr10	8096190	8096273	83
Deletion	Chr12	11652227	11652538	311
Deletion	Chr4	20813118	20813131	13
Deletion	Chr4	21306720	21306729	9
Deletion	Chr5	23435001	23476000	40999	6
Deletion	Chr12	24055093	24055094	1
Deletion	Chr5	25535944	25535949	5
Deletion	Chr12	26403024	26403028	4
Deletion	Chr8	29079001	29142000	62999	7
Deletion	Chr4	34486871	34486874	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	17395213	17405289
Inversion	Chr5	17395224	17405297

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes