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Mutant Information

Mutant Name	FN732-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN732-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 28

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 9315911 C-A Hetero INTERGENIC
SBS Chr1 24000951 T-G Homo INTERGENIC
SBS Chr1 38319499 G-A Hetero UTR_3_PRIME
SBS Chr2 7671345 C-T Hetero INTERGENIC
SBS Chr2 7671348 C-T Hetero INTERGENIC
SBS Chr2 14351078 C-T Hetero INTERGENIC
SBS Chr2 15038541 T-A Homo INTERGENIC
SBS Chr2 33272535 G-T Hetero INTRON
SBS Chr3 4787949 T-A Homo UTR_3_PRIME
SBS Chr3 25709567 T-C Homo INTERGENIC
SBS Chr4 11367527 T-C Homo INTERGENIC
SBS Chr5 11187136 C-T Hetero INTERGENIC
SBS Chr5 20887497 C-A Hetero INTERGENIC
SBS Chr5 20887498 C-G Hetero INTERGENIC
SBS Chr5 25044492 C-T Hetero INTERGENIC
SBS Chr5 30206511 C-A Hetero INTERGENIC
SBS Chr6 2738193 A-T Hetero INTRON
SBS Chr6 12136918 G-A Hetero INTERGENIC
SBS Chr6 14542692 C-T Hetero INTERGENIC
SBS Chr7 17893099 C-A Hetero INTERGENIC
SBS Chr7 26749487 G-T Hetero SYNONYMOUS_CODING
SBS Chr8 10806472 G-C Homo INTERGENIC
SBS Chr8 16343441 C-G Homo INTERGENIC
SBS Chr8 16343445 T-G Homo INTERGENIC
SBS Chr9 16855258 T-C Hetero INTERGENIC
SBS Chr12 5098804 T-C Hetero INTRON
SBS Chr12 5098814 C-T Hetero INTRON
SBS Chr12 26133480 G-A Hetero INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 1824072 1824073 1
Deletion Chr11 3563169 3563171 2 OsKitaake11g049500
Deletion Chr3 5815475 5815491 16 OsKitaake03g082500
Deletion Chr2 6530067 6530069 2
Deletion Chr8 8141750 8141755 5
Deletion Chr10 13264002 13264003 1
Deletion Chr7 14545299 14545304 5
Deletion Chr5 18680235 18680245 10
Deletion Chr8 20626007 20626008 1
Deletion Chr6 21352584 21352586 2
Deletion Chr3 21421180 21421182 2
Deletion Chr6 26940650 26940665 15
Deletion Chr2 34814001 34932000 117999 16

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr6 18904997 18904999 1

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 5155361 5694195 OsKitaake09g032400

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 12432409 Chr7 2023242 OsKitaake07g027600

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	9315911	C-A	Hetero	INTERGENIC
SBS	Chr1	24000951	T-G	Homo	INTERGENIC
SBS	Chr1	38319499	G-A	Hetero	UTR_3_PRIME
SBS	Chr2	7671345	C-T	Hetero	INTERGENIC
SBS	Chr2	7671348	C-T	Hetero	INTERGENIC
SBS	Chr2	14351078	C-T	Hetero	INTERGENIC
SBS	Chr2	15038541	T-A	Homo	INTERGENIC
SBS	Chr2	33272535	G-T	Hetero	INTRON
SBS	Chr3	4787949	T-A	Homo	UTR_3_PRIME
SBS	Chr3	25709567	T-C	Homo	INTERGENIC
SBS	Chr4	11367527	T-C	Homo	INTERGENIC
SBS	Chr5	11187136	C-T	Hetero	INTERGENIC
SBS	Chr5	20887497	C-A	Hetero	INTERGENIC
SBS	Chr5	20887498	C-G	Hetero	INTERGENIC
SBS	Chr5	25044492	C-T	Hetero	INTERGENIC
SBS	Chr5	30206511	C-A	Hetero	INTERGENIC
SBS	Chr6	2738193	A-T	Hetero	INTRON
SBS	Chr6	12136918	G-A	Hetero	INTERGENIC
SBS	Chr6	14542692	C-T	Hetero	INTERGENIC
SBS	Chr7	17893099	C-A	Hetero	INTERGENIC
SBS	Chr7	26749487	G-T	Hetero	SYNONYMOUS_CODING
SBS	Chr8	10806472	G-C	Homo	INTERGENIC
SBS	Chr8	16343441	C-G	Homo	INTERGENIC
SBS	Chr8	16343445	T-G	Homo	INTERGENIC
SBS	Chr9	16855258	T-C	Hetero	INTERGENIC
SBS	Chr12	5098804	T-C	Hetero	INTRON
SBS	Chr12	5098814	C-T	Hetero	INTRON
SBS	Chr12	26133480	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	1824072	1824073	1
Deletion	Chr11	3563169	3563171	2	OsKitaake11g049500
Deletion	Chr3	5815475	5815491	16	OsKitaake03g082500
Deletion	Chr2	6530067	6530069	2
Deletion	Chr8	8141750	8141755	5
Deletion	Chr10	13264002	13264003	1
Deletion	Chr7	14545299	14545304	5
Deletion	Chr5	18680235	18680245	10
Deletion	Chr8	20626007	20626008	1
Deletion	Chr6	21352584	21352586	2
Deletion	Chr3	21421180	21421182	2
Deletion	Chr6	26940650	26940665	15
Deletion	Chr2	34814001	34932000	117999	16

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	5155361	5694195	OsKitaake09g032400

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes