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Mutant Information

Mutant Name	FN733-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN733-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 30

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 16831307 C-T Hetero INTERGENIC
SBS Chr1 21966438 C-G Homo INTRON
SBS Chr2 16886625 A-T Hetero INTERGENIC
SBS Chr2 30595276 C-A Hetero SYNONYMOUS_CODING
SBS Chr3 3384351 G-T Hetero INTERGENIC
SBS Chr3 33091039 C-A Hetero INTERGENIC
SBS Chr4 4809113 C-A Homo INTERGENIC
SBS Chr4 18107840 G-C Homo INTERGENIC
SBS Chr4 32555961 A-G Hetero INTRON
SBS Chr4 36843280 A-T Hetero INTRON
SBS Chr4 36866978 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake04g322000
SBS Chr5 11401257 G-T Homo INTERGENIC
SBS Chr5 13203358 T-A Homo INTERGENIC
SBS Chr5 21163561 A-T Hetero INTERGENIC
SBS Chr5 22584878 T-A Hetero INTERGENIC
SBS Chr6 5180383 G-T Hetero INTERGENIC
SBS Chr6 7962025 G-C Homo INTERGENIC
SBS Chr6 21133247 T-A Homo INTERGENIC
SBS Chr6 28012337 G-A Homo INTERGENIC
SBS Chr7 619072 A-T Hetero INTERGENIC
SBS Chr7 10531262 T-A Hetero INTERGENIC
SBS Chr7 17637580 C-A Hetero INTRON
SBS Chr7 18389117 T-A Hetero INTERGENIC
SBS Chr7 24696623 C-T Homo INTERGENIC
SBS Chr9 8231559 C-G Hetero INTERGENIC
SBS Chr9 15688418 G-T Hetero INTRON
SBS Chr9 15688419 T-G Hetero INTRON
SBS Chr10 3559645 G-C Hetero INTERGENIC
SBS Chr10 9700167 A-T Homo INTERGENIC
SBS Chr12 1916848 C-T Homo INTERGENIC

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 301001 329000 27999 5
Deletion Chr9 906671 906673 2
Deletion Chr3 7115001 7124000 8999
Deletion Chr1 8035956 8035958 2
Deletion Chr12 15078321 15078322 1
Deletion Chr8 16515026 16515032 6
Deletion Chr7 16773817 16773908 91
Deletion Chr1 18591001 18724000 132999 8
Deletion Chr3 20337876 20337877 1
Deletion Chr8 24824288 24824292 4
Deletion Chr6 27161242 27161243 1

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 8353503 8353505 1
Insertion Chr11 25164760 25164763 2

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 18539544 18560958
Inversion Chr1 18587999 18838891
Inversion Chr1 18878542 19403534

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16831307	C-T	Hetero	INTERGENIC
SBS	Chr1	21966438	C-G	Homo	INTRON
SBS	Chr2	16886625	A-T	Hetero	INTERGENIC
SBS	Chr2	30595276	C-A	Hetero	SYNONYMOUS_CODING
SBS	Chr3	3384351	G-T	Hetero	INTERGENIC
SBS	Chr3	33091039	C-A	Hetero	INTERGENIC
SBS	Chr4	4809113	C-A	Homo	INTERGENIC
SBS	Chr4	18107840	G-C	Homo	INTERGENIC
SBS	Chr4	32555961	A-G	Hetero	INTRON
SBS	Chr4	36843280	A-T	Hetero	INTRON
SBS	Chr4	36866978	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g322000
SBS	Chr5	11401257	G-T	Homo	INTERGENIC
SBS	Chr5	13203358	T-A	Homo	INTERGENIC
SBS	Chr5	21163561	A-T	Hetero	INTERGENIC
SBS	Chr5	22584878	T-A	Hetero	INTERGENIC
SBS	Chr6	5180383	G-T	Hetero	INTERGENIC
SBS	Chr6	7962025	G-C	Homo	INTERGENIC
SBS	Chr6	21133247	T-A	Homo	INTERGENIC
SBS	Chr6	28012337	G-A	Homo	INTERGENIC
SBS	Chr7	619072	A-T	Hetero	INTERGENIC
SBS	Chr7	10531262	T-A	Hetero	INTERGENIC
SBS	Chr7	17637580	C-A	Hetero	INTRON
SBS	Chr7	18389117	T-A	Hetero	INTERGENIC
SBS	Chr7	24696623	C-T	Homo	INTERGENIC
SBS	Chr9	8231559	C-G	Hetero	INTERGENIC
SBS	Chr9	15688418	G-T	Hetero	INTRON
SBS	Chr9	15688419	T-G	Hetero	INTRON
SBS	Chr10	3559645	G-C	Hetero	INTERGENIC
SBS	Chr10	9700167	A-T	Homo	INTERGENIC
SBS	Chr12	1916848	C-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	301001	329000	27999	5
Deletion	Chr9	906671	906673	2
Deletion	Chr3	7115001	7124000	8999
Deletion	Chr1	8035956	8035958	2
Deletion	Chr12	15078321	15078322	1
Deletion	Chr8	16515026	16515032	6
Deletion	Chr7	16773817	16773908	91
Deletion	Chr1	18591001	18724000	132999	8
Deletion	Chr3	20337876	20337877	1
Deletion	Chr8	24824288	24824292	4
Deletion	Chr6	27161242	27161243	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	18539544	18560958
Inversion	Chr1	18587999	18838891
Inversion	Chr1	18878542	19403534

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes