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Mutant Information

Mutant Name	FN735-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN735-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 30

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 33645199 G-A Hetero INTRON
SBS Chr1 33645200 C-A Hetero INTRON
SBS Chr1 36693182 T-A Hetero INTRON
SBS Chr1 42309481 T-A Hetero INTRON
SBS Chr2 34340113 T-G Hetero INTERGENIC
SBS Chr2 36424920 T-G Hetero UTR_5_PRIME
SBS Chr3 7306189 C-T Homo INTRON
SBS Chr3 28416401 T-A Hetero INTERGENIC
SBS Chr4 3175664 C-T Hetero SYNONYMOUS_CODING
SBS Chr4 14071179 A-G Hetero INTERGENIC
SBS Chr5 2219375 A-G Homo UTR_3_PRIME
SBS Chr5 13825526 C-A Homo INTERGENIC
SBS Chr6 1007766 G-A Homo INTERGENIC
SBS Chr6 6342425 C-G Homo INTERGENIC
SBS Chr6 6395647 A-C Homo INTERGENIC
SBS Chr7 25394298 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake07g230100
SBS Chr9 4120106 G-A Hetero INTERGENIC
SBS Chr9 9771569 T-C Hetero INTERGENIC
SBS Chr9 11956443 A-G Hetero INTERGENIC
SBS Chr10 5152601 T-C Homo INTERGENIC
SBS Chr10 9517501 C-A Hetero INTERGENIC
SBS Chr11 648624 T-C Hetero INTERGENIC
SBS Chr11 19635533 A-T Hetero INTRON
SBS Chr11 24807073 T-A Hetero INTERGENIC
SBS Chr11 25991602 C-T Hetero INTERGENIC
SBS Chr12 2888466 C-T Homo INTERGENIC
SBS Chr12 9444090 G-A Homo INTERGENIC
SBS Chr12 9444098 T-A Homo INTERGENIC
SBS Chr12 11848331 T-C Homo INTERGENIC
SBS Chr12 12961356 A-G Homo INTERGENIC

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 1116852 1116855 3
Deletion Chr2 8067396 8067407 11 OsKitaake02g103500
Deletion Chr12 9822001 9852000 29999 2
Deletion Chr6 10288908 10288910 2
Deletion Chr5 10928001 10937000 8999
Deletion Chr4 11077905 11077907 2
Deletion Chr11 12463451 12463476 25
Deletion Chr7 18906381 18906383 2
Deletion Chr7 21768039 21768040 1 OsKitaake07g183000
Deletion Chr5 27109752 27109758 6 OsKitaake05g244000
Deletion Chr1 39913062 39913064 2 2

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr6 5878477 5878480 2
Insertion Chr9 7344810 7344818 7

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	33645199	G-A	Hetero	INTRON
SBS	Chr1	33645200	C-A	Hetero	INTRON
SBS	Chr1	36693182	T-A	Hetero	INTRON
SBS	Chr1	42309481	T-A	Hetero	INTRON
SBS	Chr2	34340113	T-G	Hetero	INTERGENIC
SBS	Chr2	36424920	T-G	Hetero	UTR_5_PRIME
SBS	Chr3	7306189	C-T	Homo	INTRON
SBS	Chr3	28416401	T-A	Hetero	INTERGENIC
SBS	Chr4	3175664	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr4	14071179	A-G	Hetero	INTERGENIC
SBS	Chr5	2219375	A-G	Homo	UTR_3_PRIME
SBS	Chr5	13825526	C-A	Homo	INTERGENIC
SBS	Chr6	1007766	G-A	Homo	INTERGENIC
SBS	Chr6	6342425	C-G	Homo	INTERGENIC
SBS	Chr6	6395647	A-C	Homo	INTERGENIC
SBS	Chr7	25394298	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g230100
SBS	Chr9	4120106	G-A	Hetero	INTERGENIC
SBS	Chr9	9771569	T-C	Hetero	INTERGENIC
SBS	Chr9	11956443	A-G	Hetero	INTERGENIC
SBS	Chr10	5152601	T-C	Homo	INTERGENIC
SBS	Chr10	9517501	C-A	Hetero	INTERGENIC
SBS	Chr11	648624	T-C	Hetero	INTERGENIC
SBS	Chr11	19635533	A-T	Hetero	INTRON
SBS	Chr11	24807073	T-A	Hetero	INTERGENIC
SBS	Chr11	25991602	C-T	Hetero	INTERGENIC
SBS	Chr12	2888466	C-T	Homo	INTERGENIC
SBS	Chr12	9444090	G-A	Homo	INTERGENIC
SBS	Chr12	9444098	T-A	Homo	INTERGENIC
SBS	Chr12	11848331	T-C	Homo	INTERGENIC
SBS	Chr12	12961356	A-G	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	1116852	1116855	3
Deletion	Chr2	8067396	8067407	11	OsKitaake02g103500
Deletion	Chr12	9822001	9852000	29999	2
Deletion	Chr6	10288908	10288910	2
Deletion	Chr5	10928001	10937000	8999
Deletion	Chr4	11077905	11077907	2
Deletion	Chr11	12463451	12463476	25
Deletion	Chr7	18906381	18906383	2
Deletion	Chr7	21768039	21768040	1	OsKitaake07g183000
Deletion	Chr5	27109752	27109758	6	OsKitaake05g244000
Deletion	Chr1	39913062	39913064	2	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes