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Mutant Information

Mutant Name	FN736-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN736-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 21

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr3 4699048 G-A Homo INTERGENIC
SBS Chr3 34235826 C-T Homo INTRON
SBS Chr5 11354041 G-A Homo INTERGENIC
SBS Chr5 19119201 T-A Hetero INTRON
SBS Chr6 8398289 G-A Homo INTERGENIC
SBS Chr6 8546207 G-A Homo INTERGENIC
SBS Chr6 24602234 G-T Hetero INTERGENIC
SBS Chr7 20288083 G-T Hetero INTERGENIC
SBS Chr7 20288084 G-T Hetero INTERGENIC
SBS Chr7 23536836 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake07g206200
SBS Chr7 24486256 T-A Hetero INTERGENIC
SBS Chr7 24802713 G-A Hetero INTERGENIC
SBS Chr10 12528327 C-T Homo INTERGENIC
SBS Chr10 19674023 T-A Homo INTRON
SBS Chr11 5288281 A-G Homo INTERGENIC
SBS Chr11 21896811 G-A Hetero INTRON
SBS Chr12 8288946 G-A Homo INTERGENIC
SBS Chr12 9541709 A-T Homo INTERGENIC
SBS Chr12 9541740 C-T Homo INTERGENIC
SBS Chr12 25559549 C-A Hetero INTERGENIC
SBS Chr12 25817190 C-A Hetero INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 1485718 1486109 391
Deletion Chr1 4485031 4485041 10
Deletion Chr6 5212419 5212423 4
Deletion Chr6 7489307 7489308 1
Deletion Chr11 10829405 10829409 4
Deletion Chr6 13208282 13208297 15
Deletion Chr1 18316680 18316682 2
Deletion Chr3 18331001 18348000 16999 2
Deletion Chr10 20950567 20950568 1 OsKitaake10g161800
Deletion Chr2 23011427 23011429 2 OsKitaake02g224700
Deletion Chr1 26143857 26143861 4
Deletion Chr5 29314935 29314937 2
Deletion Chr2 35895048 35895050 2

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 32643895 32643898 2
Insertion Chr12 7994150 7994152 1
Insertion Chr6 31040491 31040519 27

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 8507009 9052029
Inversion Chr5 8507025 9052032

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr3	4699048	G-A	Homo	INTERGENIC
SBS	Chr3	34235826	C-T	Homo	INTRON
SBS	Chr5	11354041	G-A	Homo	INTERGENIC
SBS	Chr5	19119201	T-A	Hetero	INTRON
SBS	Chr6	8398289	G-A	Homo	INTERGENIC
SBS	Chr6	8546207	G-A	Homo	INTERGENIC
SBS	Chr6	24602234	G-T	Hetero	INTERGENIC
SBS	Chr7	20288083	G-T	Hetero	INTERGENIC
SBS	Chr7	20288084	G-T	Hetero	INTERGENIC
SBS	Chr7	23536836	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g206200
SBS	Chr7	24486256	T-A	Hetero	INTERGENIC
SBS	Chr7	24802713	G-A	Hetero	INTERGENIC
SBS	Chr10	12528327	C-T	Homo	INTERGENIC
SBS	Chr10	19674023	T-A	Homo	INTRON
SBS	Chr11	5288281	A-G	Homo	INTERGENIC
SBS	Chr11	21896811	G-A	Hetero	INTRON
SBS	Chr12	8288946	G-A	Homo	INTERGENIC
SBS	Chr12	9541709	A-T	Homo	INTERGENIC
SBS	Chr12	9541740	C-T	Homo	INTERGENIC
SBS	Chr12	25559549	C-A	Hetero	INTERGENIC
SBS	Chr12	25817190	C-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	1485718	1486109	391
Deletion	Chr1	4485031	4485041	10
Deletion	Chr6	5212419	5212423	4
Deletion	Chr6	7489307	7489308	1
Deletion	Chr11	10829405	10829409	4
Deletion	Chr6	13208282	13208297	15
Deletion	Chr1	18316680	18316682	2
Deletion	Chr3	18331001	18348000	16999	2
Deletion	Chr10	20950567	20950568	1	OsKitaake10g161800
Deletion	Chr2	23011427	23011429	2	OsKitaake02g224700
Deletion	Chr1	26143857	26143861	4
Deletion	Chr5	29314935	29314937	2
Deletion	Chr2	35895048	35895050	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	8507009	9052029
Inversion	Chr5	8507025	9052032

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes