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Mutant Information

Mutant Name	FN737-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN737-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 23

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2910273 T-A Hetero INTERGENIC
SBS Chr1 37165710 T-C Hetero INTERGENIC
SBS Chr1 43455807 A-C Hetero INTERGENIC
SBS Chr2 13150633 G-A Hetero INTERGENIC
SBS Chr2 26165079 G-A Homo INTERGENIC
SBS Chr2 31553792 C-A Hetero INTERGENIC
SBS Chr3 9767295 C-T Hetero SPLICE_SITE_REGION
SBS Chr3 15429230 C-T Hetero UTR_3_PRIME
SBS Chr3 19680372 C-T Homo INTERGENIC
SBS Chr4 10604222 C-T Homo INTERGENIC
SBS Chr4 10604224 G-A Homo INTERGENIC
SBS Chr4 29838816 C-T Hetero INTERGENIC
SBS Chr5 8086098 G-A Hetero INTERGENIC
SBS Chr5 11524678 T-A Hetero INTERGENIC
SBS Chr5 24952445 A-T Homo INTERGENIC
SBS Chr7 14996481 C-G Homo INTERGENIC
SBS Chr7 23879361 A-G Homo INTERGENIC
SBS Chr8 17927582 A-T Homo INTERGENIC
SBS Chr9 5674497 T-A Hetero INTERGENIC
SBS Chr10 23141837 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake10g195250
SBS Chr11 19173785 T-A Hetero INTERGENIC
SBS Chr12 4226750 C-T Hetero INTERGENIC
SBS Chr12 25659549 C-T Homo INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 932590 932591 1
Deletion Chr2 1678676 1678677 1
Deletion Chr5 4888112 4888113 1 OsKitaake05g054900
Deletion Chr12 8156001 8201000 44999 OsKitaake12g085500
Deletion Chr12 9610001 9744000 133999 10
Deletion Chr12 10310001 10565000 254999 20
Deletion Chr1 11258001 11300000 41999 6
Deletion Chr6 11401969 11401986 17
Deletion Chr10 14821613 14821616 3
Deletion Chr7 19460129 19460131 2
Deletion Chr5 24393962 24393966 4
Deletion Chr1 25535087 25535089 2
Deletion Chr4 25672406 25672407 1
Deletion Chr1 30944263 30944264 1

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 1847473 1847477 3

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2910273	T-A	Hetero	INTERGENIC
SBS	Chr1	37165710	T-C	Hetero	INTERGENIC
SBS	Chr1	43455807	A-C	Hetero	INTERGENIC
SBS	Chr2	13150633	G-A	Hetero	INTERGENIC
SBS	Chr2	26165079	G-A	Homo	INTERGENIC
SBS	Chr2	31553792	C-A	Hetero	INTERGENIC
SBS	Chr3	9767295	C-T	Hetero	SPLICE_SITE_REGION
SBS	Chr3	15429230	C-T	Hetero	UTR_3_PRIME
SBS	Chr3	19680372	C-T	Homo	INTERGENIC
SBS	Chr4	10604222	C-T	Homo	INTERGENIC
SBS	Chr4	10604224	G-A	Homo	INTERGENIC
SBS	Chr4	29838816	C-T	Hetero	INTERGENIC
SBS	Chr5	8086098	G-A	Hetero	INTERGENIC
SBS	Chr5	11524678	T-A	Hetero	INTERGENIC
SBS	Chr5	24952445	A-T	Homo	INTERGENIC
SBS	Chr7	14996481	C-G	Homo	INTERGENIC
SBS	Chr7	23879361	A-G	Homo	INTERGENIC
SBS	Chr8	17927582	A-T	Homo	INTERGENIC
SBS	Chr9	5674497	T-A	Hetero	INTERGENIC
SBS	Chr10	23141837	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g195250
SBS	Chr11	19173785	T-A	Hetero	INTERGENIC
SBS	Chr12	4226750	C-T	Hetero	INTERGENIC
SBS	Chr12	25659549	C-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	932590	932591	1
Deletion	Chr2	1678676	1678677	1
Deletion	Chr5	4888112	4888113	1	OsKitaake05g054900
Deletion	Chr12	8156001	8201000	44999	OsKitaake12g085500
Deletion	Chr12	9610001	9744000	133999	10
Deletion	Chr12	10310001	10565000	254999	20
Deletion	Chr1	11258001	11300000	41999	6
Deletion	Chr6	11401969	11401986	17
Deletion	Chr10	14821613	14821616	3
Deletion	Chr7	19460129	19460131	2
Deletion	Chr5	24393962	24393966	4
Deletion	Chr1	25535087	25535089	2
Deletion	Chr4	25672406	25672407	1
Deletion	Chr1	30944263	30944264	1

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes