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Mutant Information

Mutant Name	FN738-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN738-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 26

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 9770022 T-A Hetero INTERGENIC
SBS Chr1 26078133 C-T Homo SYNONYMOUS_CODING
SBS Chr2 33998732 C-A Hetero INTERGENIC
SBS Chr2 33998733 A-T Hetero INTERGENIC
SBS Chr3 19736741 G-T Hetero INTERGENIC
SBS Chr3 19736742 C-T Hetero INTERGENIC
SBS Chr3 26810446 C-T Hetero INTERGENIC
SBS Chr4 274794 T-G Homo INTERGENIC
SBS Chr4 11599359 C-T Hetero INTERGENIC
SBS Chr4 15729539 G-A Hetero INTERGENIC
SBS Chr4 33711710 C-T Homo INTRON
SBS Chr5 10537640 G-A Hetero INTERGENIC
SBS Chr5 28997414 T-G Hetero INTERGENIC
SBS Chr5 29086247 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake05g275100
SBS Chr5 29086248 G-T Hetero SYNONYMOUS_CODING
SBS Chr6 5425598 C-T Homo INTERGENIC
SBS Chr6 11217552 C-G Hetero INTERGENIC
SBS Chr6 13106019 A-T Hetero INTERGENIC
SBS Chr6 20097560 T-A Hetero INTERGENIC
SBS Chr7 20032801 C-A Homo INTERGENIC
SBS Chr8 4112031 C-T Homo INTERGENIC
SBS Chr8 22442814 C-G Homo SYNONYMOUS_CODING
SBS Chr10 9443200 G-C Hetero INTERGENIC
SBS Chr10 10967175 A-T Hetero INTERGENIC
SBS Chr12 17686060 A-G Hetero INTERGENIC
SBS Chr12 18381784 C-A Hetero INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 7403001 7580000 176999 4
Deletion Chr4 7590001 8167000 576999 42
Deletion Chr4 8172001 8330000 157999 7
Deletion Chr7 8220248 8220257 9
Deletion Chr4 8345001 8430000 84999
Deletion Chr7 8464411 8464484 73
Deletion Chr7 8683538 8683539 1
Deletion Chr1 10349250 10349377 127
Deletion Chr2 12630453 12630454 1
Deletion Chr1 38763223 38763224 1

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 5038463 5038466 2
Insertion Chr8 4536471 4536474 2
Insertion Chr5 30258973 30258975 1
Insertion Chr9 2754476 2754478 1

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 1170792 Chr9 15410157 OsKitaake11g014200
Translocation Chr12 7599521 Chr7 12727132 OsKitaake12g082700
Translocation Chr12 7599539 Chr7 12725936 OsKitaake12g082700
Translocation Chr8 13582643 Chr4 9661040
Translocation Chr12 16377086 Chr9 15410142

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	9770022	T-A	Hetero	INTERGENIC
SBS	Chr1	26078133	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr2	33998732	C-A	Hetero	INTERGENIC
SBS	Chr2	33998733	A-T	Hetero	INTERGENIC
SBS	Chr3	19736741	G-T	Hetero	INTERGENIC
SBS	Chr3	19736742	C-T	Hetero	INTERGENIC
SBS	Chr3	26810446	C-T	Hetero	INTERGENIC
SBS	Chr4	274794	T-G	Homo	INTERGENIC
SBS	Chr4	11599359	C-T	Hetero	INTERGENIC
SBS	Chr4	15729539	G-A	Hetero	INTERGENIC
SBS	Chr4	33711710	C-T	Homo	INTRON
SBS	Chr5	10537640	G-A	Hetero	INTERGENIC
SBS	Chr5	28997414	T-G	Hetero	INTERGENIC
SBS	Chr5	29086247	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g275100
SBS	Chr5	29086248	G-T	Hetero	SYNONYMOUS_CODING
SBS	Chr6	5425598	C-T	Homo	INTERGENIC
SBS	Chr6	11217552	C-G	Hetero	INTERGENIC
SBS	Chr6	13106019	A-T	Hetero	INTERGENIC
SBS	Chr6	20097560	T-A	Hetero	INTERGENIC
SBS	Chr7	20032801	C-A	Homo	INTERGENIC
SBS	Chr8	4112031	C-T	Homo	INTERGENIC
SBS	Chr8	22442814	C-G	Homo	SYNONYMOUS_CODING
SBS	Chr10	9443200	G-C	Hetero	INTERGENIC
SBS	Chr10	10967175	A-T	Hetero	INTERGENIC
SBS	Chr12	17686060	A-G	Hetero	INTERGENIC
SBS	Chr12	18381784	C-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	7403001	7580000	176999	4
Deletion	Chr4	7590001	8167000	576999	42
Deletion	Chr4	8172001	8330000	157999	7
Deletion	Chr7	8220248	8220257	9
Deletion	Chr4	8345001	8430000	84999
Deletion	Chr7	8464411	8464484	73
Deletion	Chr7	8683538	8683539	1
Deletion	Chr1	10349250	10349377	127
Deletion	Chr2	12630453	12630454	1
Deletion	Chr1	38763223	38763224	1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	1170792	Chr9	15410157	OsKitaake11g014200
Translocation	Chr12	7599521	Chr7	12727132	OsKitaake12g082700
Translocation	Chr12	7599539	Chr7	12725936	OsKitaake12g082700
Translocation	Chr8	13582643	Chr4	9661040
Translocation	Chr12	16377086	Chr9	15410142

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes