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Mutant Information

Mutant Name	FN739-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN739-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 40

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1865885 G-C Hetero INTERGENIC
SBS Chr1 14951775 G-A Hetero INTERGENIC
SBS Chr1 23226652 C-G Hetero INTERGENIC
SBS Chr1 23409186 A-G Hetero INTERGENIC
SBS Chr2 28602290 G-A Hetero INTERGENIC
SBS Chr3 2277742 G-T Hetero INTERGENIC
SBS Chr3 17686540 G-A Homo INTERGENIC
SBS Chr3 24412761 A-T Hetero INTERGENIC
SBS Chr4 9043388 T-C Hetero INTERGENIC
SBS Chr4 13026843 G-C Hetero INTERGENIC
SBS Chr4 21465028 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake04g120300
SBS Chr4 35887642 C-T Homo SYNONYMOUS_CODING
SBS Chr5 7130121 A-G Hetero INTERGENIC
SBS Chr5 9170397 C-A Hetero INTERGENIC
SBS Chr5 26648944 C-G Hetero INTERGENIC
SBS Chr6 8686922 A-T Homo INTERGENIC
SBS Chr6 24288367 C-T Hetero INTERGENIC
SBS Chr6 25523846 G-T Homo INTERGENIC
SBS Chr7 12869323 A-G Hetero INTERGENIC
SBS Chr7 14592809 C-T Hetero INTERGENIC
SBS Chr7 14879341 G-A Hetero INTERGENIC
SBS Chr8 2276161 A-T Hetero INTERGENIC
SBS Chr8 23090017 T-G Hetero INTERGENIC
SBS Chr9 1166579 G-A Hetero INTRON
SBS Chr9 7742453 T-C Hetero INTERGENIC
SBS Chr9 10819956 C-A Hetero INTERGENIC
SBS Chr9 12738140 T-A Hetero INTERGENIC
SBS Chr10 9512960 C-T Homo INTERGENIC
SBS Chr10 11200571 A-G Homo INTERGENIC
SBS Chr10 21059306 A-T Homo INTRON
SBS Chr11 1063689 T-C Hetero INTERGENIC
SBS Chr11 3940036 T-C Homo INTERGENIC
SBS Chr11 14709994 A-G Homo INTERGENIC
SBS Chr11 14709996 T-A Homo INTERGENIC
SBS Chr11 14709997 C-A Homo INTERGENIC
SBS Chr11 27590870 G-T Hetero INTERGENIC
SBS Chr11 28520347 G-A Hetero INTRON
SBS Chr12 11416108 C-T Hetero INTERGENIC
SBS Chr12 14641488 G-A Hetero INTERGENIC
SBS Chr12 14782308 C-G Hetero INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 18326 18327 1
Deletion Chr2 1762903 1762904 1
Deletion Chr6 8629486 8629487 1
Deletion Chr12 9876659 9876805 146
Deletion Chr11 11070794 11070798 4
Deletion Chr11 15001001 15012000 10999
Deletion Chr6 16724466 16724468 2
Deletion Chr2 18333331 18333337 6
Deletion Chr7 27956738 27956745 7
Deletion Chr2 29759001 29839000 79999 6
Deletion Chr4 32749833 32749845 12
Deletion Chr1 35284445 35284453 8

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 6961503 6961505 1
Insertion Chr6 87853 87856 2
Insertion Chr6 16020336 16020338 1 OsKitaake06g154000

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 12322363 12388314 OsKitaake09g080900
Inversion Chr9 12322365 12388324 OsKitaake09g080900

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 8051820 Chr4 12859826 OsKitaake04g061200
Translocation Chr9 8051829 Chr4 12757404 OsKitaake04g061000

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1865885	G-C	Hetero	INTERGENIC
SBS	Chr1	14951775	G-A	Hetero	INTERGENIC
SBS	Chr1	23226652	C-G	Hetero	INTERGENIC
SBS	Chr1	23409186	A-G	Hetero	INTERGENIC
SBS	Chr2	28602290	G-A	Hetero	INTERGENIC
SBS	Chr3	2277742	G-T	Hetero	INTERGENIC
SBS	Chr3	17686540	G-A	Homo	INTERGENIC
SBS	Chr3	24412761	A-T	Hetero	INTERGENIC
SBS	Chr4	9043388	T-C	Hetero	INTERGENIC
SBS	Chr4	13026843	G-C	Hetero	INTERGENIC
SBS	Chr4	21465028	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g120300
SBS	Chr4	35887642	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr5	7130121	A-G	Hetero	INTERGENIC
SBS	Chr5	9170397	C-A	Hetero	INTERGENIC
SBS	Chr5	26648944	C-G	Hetero	INTERGENIC
SBS	Chr6	8686922	A-T	Homo	INTERGENIC
SBS	Chr6	24288367	C-T	Hetero	INTERGENIC
SBS	Chr6	25523846	G-T	Homo	INTERGENIC
SBS	Chr7	12869323	A-G	Hetero	INTERGENIC
SBS	Chr7	14592809	C-T	Hetero	INTERGENIC
SBS	Chr7	14879341	G-A	Hetero	INTERGENIC
SBS	Chr8	2276161	A-T	Hetero	INTERGENIC
SBS	Chr8	23090017	T-G	Hetero	INTERGENIC
SBS	Chr9	1166579	G-A	Hetero	INTRON
SBS	Chr9	7742453	T-C	Hetero	INTERGENIC
SBS	Chr9	10819956	C-A	Hetero	INTERGENIC
SBS	Chr9	12738140	T-A	Hetero	INTERGENIC
SBS	Chr10	9512960	C-T	Homo	INTERGENIC
SBS	Chr10	11200571	A-G	Homo	INTERGENIC
SBS	Chr10	21059306	A-T	Homo	INTRON
SBS	Chr11	1063689	T-C	Hetero	INTERGENIC
SBS	Chr11	3940036	T-C	Homo	INTERGENIC
SBS	Chr11	14709994	A-G	Homo	INTERGENIC
SBS	Chr11	14709996	T-A	Homo	INTERGENIC
SBS	Chr11	14709997	C-A	Homo	INTERGENIC
SBS	Chr11	27590870	G-T	Hetero	INTERGENIC
SBS	Chr11	28520347	G-A	Hetero	INTRON
SBS	Chr12	11416108	C-T	Hetero	INTERGENIC
SBS	Chr12	14641488	G-A	Hetero	INTERGENIC
SBS	Chr12	14782308	C-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	18326	18327	1
Deletion	Chr2	1762903	1762904	1
Deletion	Chr6	8629486	8629487	1
Deletion	Chr12	9876659	9876805	146
Deletion	Chr11	11070794	11070798	4
Deletion	Chr11	15001001	15012000	10999
Deletion	Chr6	16724466	16724468	2
Deletion	Chr2	18333331	18333337	6
Deletion	Chr7	27956738	27956745	7
Deletion	Chr2	29759001	29839000	79999	6
Deletion	Chr4	32749833	32749845	12
Deletion	Chr1	35284445	35284453	8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	12322363	12388314	OsKitaake09g080900
Inversion	Chr9	12322365	12388324	OsKitaake09g080900

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes