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Mutant Information

Mutant Name	FN742-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN742-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 45

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 6782622 A-C Hetero INTERGENIC
SBS Chr1 10575779 A-G Homo INTERGENIC
SBS Chr1 19150091 G-T Hetero INTERGENIC
SBS Chr1 23057638 G-A Hetero INTERGENIC
SBS Chr1 26241252 T-C Hetero INTRON
SBS Chr2 9898391 G-A Hetero INTERGENIC
SBS Chr2 21561901 T-A Hetero INTERGENIC
SBS Chr2 25831416 G-A Hetero INTERGENIC
SBS Chr2 27110222 C-T Hetero INTERGENIC
SBS Chr2 33550529 T-A Hetero INTRON
SBS Chr2 33550530 C-T Hetero INTRON
SBS Chr2 33650779 G-A Hetero UTR_3_PRIME
SBS Chr2 35918462 C-A Hetero INTERGENIC
SBS Chr3 4191904 C-T Hetero INTERGENIC
SBS Chr3 7238448 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g100600
SBS Chr3 26340979 C-T Hetero INTERGENIC
SBS Chr4 3387282 A-G Hetero INTERGENIC
SBS Chr4 7731488 G-T Hetero INTERGENIC
SBS Chr4 12833366 G-A Hetero INTERGENIC
SBS Chr4 13892403 C-A Hetero INTERGENIC
SBS Chr4 18345894 G-C Hetero INTERGENIC
SBS Chr4 18855045 G-C Hetero INTERGENIC
SBS Chr4 18930973 A-T Hetero INTERGENIC
SBS Chr4 18992888 G-A Hetero INTERGENIC
SBS Chr4 22356250 T-A Hetero INTERGENIC
SBS Chr5 8197884 G-A Homo INTERGENIC
SBS Chr5 22408008 A-T Hetero INTERGENIC
SBS Chr5 22779847 T-C Hetero INTERGENIC
SBS Chr6 24497388 A-G Hetero INTERGENIC
SBS Chr6 25168793 T-A Hetero INTERGENIC
SBS Chr7 5875764 C-T Homo INTERGENIC
SBS Chr7 16367936 C-G Homo INTERGENIC
SBS Chr7 18106203 G-A Homo INTRON
SBS Chr8 4972121 C-T Hetero INTERGENIC
SBS Chr8 7182171 G-T Hetero INTERGENIC
SBS Chr8 7803182 A-T Hetero INTERGENIC
SBS Chr8 11698412 C-T Hetero INTERGENIC
SBS Chr8 18100209 A-G Hetero INTERGENIC
SBS Chr9 14695650 A-G Homo INTERGENIC
SBS Chr10 6743054 C-T Homo INTERGENIC
SBS Chr11 10807505 G-A Hetero INTERGENIC
SBS Chr11 11503379 G-A Homo INTERGENIC
SBS Chr11 13603876 C-A Hetero INTERGENIC
SBS Chr11 15612902 G-T Hetero INTERGENIC
SBS Chr11 18525043 A-G Hetero INTERGENIC

Deletions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 3110894 3110895 1
Deletion Chr5 3349745 3349746 1
Deletion Chr11 7477182 7477183 1 OsKitaake11g084366
Deletion Chr10 8908307 8908312 5
Deletion Chr2 10027251 10027256 5
Deletion Chr2 13817486 13817651 165
Deletion Chr12 20108868 20108870 2
Deletion Chr2 26645001 26696000 50999 7
Deletion Chr2 33987001 34035000 47999 6

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr8 10709283 10709288 4
Insertion Chr9 14282365 14282368 2
Insertion Chr6 15924 15927 2
Insertion Chr7 12248929 12248931 1

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 2302967 2540025 2
Inversion Chr12 2307606 2540045 OsKitaake12g037900
Inversion Chr10 19692509 20257744
Inversion Chr10 19692513 20257908

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr2 4380033 Chr1 10888272 OsKitaake02g061200
Translocation Chr2 4380038 Chr1 10888823 OsKitaake02g061200
Translocation Chr5 25138763 Chr2 4380038 2
Translocation Chr5 25139135 Chr1 10888822 OsKitaake05g218500

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6782622	A-C	Hetero	INTERGENIC
SBS	Chr1	10575779	A-G	Homo	INTERGENIC
SBS	Chr1	19150091	G-T	Hetero	INTERGENIC
SBS	Chr1	23057638	G-A	Hetero	INTERGENIC
SBS	Chr1	26241252	T-C	Hetero	INTRON
SBS	Chr2	9898391	G-A	Hetero	INTERGENIC
SBS	Chr2	21561901	T-A	Hetero	INTERGENIC
SBS	Chr2	25831416	G-A	Hetero	INTERGENIC
SBS	Chr2	27110222	C-T	Hetero	INTERGENIC
SBS	Chr2	33550529	T-A	Hetero	INTRON
SBS	Chr2	33550530	C-T	Hetero	INTRON
SBS	Chr2	33650779	G-A	Hetero	UTR_3_PRIME
SBS	Chr2	35918462	C-A	Hetero	INTERGENIC
SBS	Chr3	4191904	C-T	Hetero	INTERGENIC
SBS	Chr3	7238448	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g100600
SBS	Chr3	26340979	C-T	Hetero	INTERGENIC
SBS	Chr4	3387282	A-G	Hetero	INTERGENIC
SBS	Chr4	7731488	G-T	Hetero	INTERGENIC
SBS	Chr4	12833366	G-A	Hetero	INTERGENIC
SBS	Chr4	13892403	C-A	Hetero	INTERGENIC
SBS	Chr4	18345894	G-C	Hetero	INTERGENIC
SBS	Chr4	18855045	G-C	Hetero	INTERGENIC
SBS	Chr4	18930973	A-T	Hetero	INTERGENIC
SBS	Chr4	18992888	G-A	Hetero	INTERGENIC
SBS	Chr4	22356250	T-A	Hetero	INTERGENIC
SBS	Chr5	8197884	G-A	Homo	INTERGENIC
SBS	Chr5	22408008	A-T	Hetero	INTERGENIC
SBS	Chr5	22779847	T-C	Hetero	INTERGENIC
SBS	Chr6	24497388	A-G	Hetero	INTERGENIC
SBS	Chr6	25168793	T-A	Hetero	INTERGENIC
SBS	Chr7	5875764	C-T	Homo	INTERGENIC
SBS	Chr7	16367936	C-G	Homo	INTERGENIC
SBS	Chr7	18106203	G-A	Homo	INTRON
SBS	Chr8	4972121	C-T	Hetero	INTERGENIC
SBS	Chr8	7182171	G-T	Hetero	INTERGENIC
SBS	Chr8	7803182	A-T	Hetero	INTERGENIC
SBS	Chr8	11698412	C-T	Hetero	INTERGENIC
SBS	Chr8	18100209	A-G	Hetero	INTERGENIC
SBS	Chr9	14695650	A-G	Homo	INTERGENIC
SBS	Chr10	6743054	C-T	Homo	INTERGENIC
SBS	Chr11	10807505	G-A	Hetero	INTERGENIC
SBS	Chr11	11503379	G-A	Homo	INTERGENIC
SBS	Chr11	13603876	C-A	Hetero	INTERGENIC
SBS	Chr11	15612902	G-T	Hetero	INTERGENIC
SBS	Chr11	18525043	A-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	3110894	3110895	1
Deletion	Chr5	3349745	3349746	1
Deletion	Chr11	7477182	7477183	1	OsKitaake11g084366
Deletion	Chr10	8908307	8908312	5
Deletion	Chr2	10027251	10027256	5
Deletion	Chr2	13817486	13817651	165
Deletion	Chr12	20108868	20108870	2
Deletion	Chr2	26645001	26696000	50999	7
Deletion	Chr2	33987001	34035000	47999	6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	2302967	2540025	2
Inversion	Chr12	2307606	2540045	OsKitaake12g037900
Inversion	Chr10	19692509	20257744
Inversion	Chr10	19692513	20257908

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes