Error message

  • Notice: Undefined variable: gene_info_ins in eval() (line 327 of /var/www/kitbase/tripal/drupal-7.69/modules/php/php.module(80) : eval()'d code).
  • Notice: Undefined variable: gene_info_ins in eval() (line 327 of /var/www/kitbase/tripal/drupal-7.69/modules/php/php.module(80) : eval()'d code).
  • Notice: Undefined variable: gene_info_ins in eval() (line 328 of /var/www/kitbase/tripal/drupal-7.69/modules/php/php.module(80) : eval()'d code).
  • Notice: Undefined variable: gene_info_ins in eval() (line 328 of /var/www/kitbase/tripal/drupal-7.69/modules/php/php.module(80) : eval()'d code).

Search Kitaake



Mutant Information 

Mutant NameFN743-S  [Download]
Generation M2
Genus Species Oryza Sativa
Cultivar Kitaake
Alignment File (BAM File) Download FN743-S Alignment File
Seed Availability Yes [Order Seeds]
Phenotype
  • TO:0000430 (Germination Rate) = Normal (Between 75% and 125%)
For more information, please see this phenotype file


Variant Information 

Single base substitutions: 25

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected
SBS  Chr13731639A-CHomoINTRON
SBS  Chr127536665G-AHomoNON_SYNONYMOUS_CODINGOsKitaake01g268000
SBS  Chr127536667A-THomoNON_SYNONYMOUS_CODINGOsKitaake01g268000
SBS  Chr24905428T-AHomoINTERGENIC
SBS  Chr230446802C-AHeteroUTR_5_PRIME
SBS  Chr230911368T-AHeteroINTRON
SBS  Chr32527350C-THeteroINTRON
SBS  Chr331949166A-GHeteroINTRON
SBS  Chr41404537C-GHomoINTERGENIC
SBS  Chr44813327C-GHeteroINTERGENIC
SBS  Chr427103828A-THomoINTERGENIC
SBS  Chr428293507C-GHomoSTART_GAINED
SBS  Chr432940022G-AHeteroINTERGENIC
SBS  Chr434377661A-THeteroINTERGENIC
SBS  Chr434377662C-THeteroINTERGENIC
SBS  Chr59566016T-AHeteroINTRON
SBS  Chr518767968T-GHeteroINTERGENIC
SBS  Chr617666568C-THeteroINTERGENIC
SBS  Chr7993275C-THeteroINTERGENIC
SBS  Chr728689828T-AHomoINTERGENIC
SBS  Chr98279362A-THeteroINTERGENIC
SBS  Chr918427283T-GHeteroINTERGENIC
SBS  Chr1116237881G-AHeteroINTERGENIC
SBS  Chr1220039572A-GHeteroINTERGENIC
SBS  Chr1226224316C-AHeteroSYNONYMOUS_CODING

Deletions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes
Deletion  Chr316734542167345464
Deletion  Chr8177720841777210016
Deletion  Chr1018583990185839922
Deletion  Chr619915765199157683
Deletion  Chr102128400121318000339993
Deletion  Chr6221673152216732611
Deletion  Chr236728259367282689

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes
Insertion  Chr3373583037358332 image
Insertion  Chr516407721164077264
Insertion  Chr3373583037358332
Insertion  Chr4889852288985241

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes
Translocation  Chr12100968Chr129299879
Translocation  Chr1020913109Chr129299881
Translocation  Chr1020913296Chr129299606OsKitaake01g285500