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Mutant Information

Mutant Name	FN745-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN745-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 28

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 11740951 A-C Homo INTERGENIC
SBS Chr1 43349906 A-T Homo UTR_3_PRIME
SBS Chr1 43349909 G-A Homo UTR_3_PRIME
SBS Chr2 23767342 G-T Hetero INTERGENIC
SBS Chr2 27336714 G-A Homo INTERGENIC
SBS Chr3 7877241 A-C Hetero INTERGENIC
SBS Chr3 20119061 C-T Hetero INTERGENIC
SBS Chr3 32975554 G-C Homo INTRON
SBS Chr4 7848071 G-A Hetero INTERGENIC
SBS Chr4 21927889 A-T Hetero INTERGENIC
SBS Chr4 29831603 C-A Hetero INTRON
SBS Chr5 3527326 A-T Hetero INTRON
SBS Chr5 7186533 T-C Hetero INTERGENIC
SBS Chr5 7313426 G-A Hetero SYNONYMOUS_CODING
SBS Chr5 11693309 C-A Hetero INTRON
SBS Chr6 11388981 C-G Hetero INTERGENIC
SBS Chr8 14336324 A-C Hetero INTERGENIC
SBS Chr8 24983551 C-G Homo INTERGENIC
SBS Chr9 4854978 A-T Homo INTERGENIC
SBS Chr9 11074585 C-A Homo INTRON
SBS Chr10 16075093 G-T Hetero INTERGENIC
SBS Chr11 5581731 G-C Homo INTERGENIC
SBS Chr11 17380977 G-A Hetero SYNONYMOUS_CODING
SBS Chr11 17812414 T-A Hetero INTERGENIC
SBS Chr11 17812417 T-C Hetero INTERGENIC
SBS Chr11 27458323 C-G Hetero INTERGENIC
SBS Chr12 10629452 T-C Hetero INTERGENIC
SBS Chr12 20441415 C-T Hetero INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 5854599 5854602 3
Deletion Chr9 10907477 10907603 126
Deletion Chr2 13760340 13760341 1
Deletion Chr11 14523999 14524000 1
Deletion Chr1 20009886 20009890 4
Deletion Chr10 22503597 22503598 1
Deletion Chr10 22680916 22680918 2
Deletion Chr2 25057569 25057571 2
Deletion Chr2 31074101 31074102 1
Deletion Chr4 33880971 33880978 7

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 7782621 7782624 2
Insertion Chr5 20291898 20291902 3
Insertion Chr8 2691095 2691098 2
Insertion Chr1 38196203 38196210 6 OsKitaake01g407400

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 8667984 Chr1 17284479

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11740951	A-C	Homo	INTERGENIC
SBS	Chr1	43349906	A-T	Homo	UTR_3_PRIME
SBS	Chr1	43349909	G-A	Homo	UTR_3_PRIME
SBS	Chr2	23767342	G-T	Hetero	INTERGENIC
SBS	Chr2	27336714	G-A	Homo	INTERGENIC
SBS	Chr3	7877241	A-C	Hetero	INTERGENIC
SBS	Chr3	20119061	C-T	Hetero	INTERGENIC
SBS	Chr3	32975554	G-C	Homo	INTRON
SBS	Chr4	7848071	G-A	Hetero	INTERGENIC
SBS	Chr4	21927889	A-T	Hetero	INTERGENIC
SBS	Chr4	29831603	C-A	Hetero	INTRON
SBS	Chr5	3527326	A-T	Hetero	INTRON
SBS	Chr5	7186533	T-C	Hetero	INTERGENIC
SBS	Chr5	7313426	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr5	11693309	C-A	Hetero	INTRON
SBS	Chr6	11388981	C-G	Hetero	INTERGENIC
SBS	Chr8	14336324	A-C	Hetero	INTERGENIC
SBS	Chr8	24983551	C-G	Homo	INTERGENIC
SBS	Chr9	4854978	A-T	Homo	INTERGENIC
SBS	Chr9	11074585	C-A	Homo	INTRON
SBS	Chr10	16075093	G-T	Hetero	INTERGENIC
SBS	Chr11	5581731	G-C	Homo	INTERGENIC
SBS	Chr11	17380977	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr11	17812414	T-A	Hetero	INTERGENIC
SBS	Chr11	17812417	T-C	Hetero	INTERGENIC
SBS	Chr11	27458323	C-G	Hetero	INTERGENIC
SBS	Chr12	10629452	T-C	Hetero	INTERGENIC
SBS	Chr12	20441415	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	5854599	5854602	3
Deletion	Chr9	10907477	10907603	126
Deletion	Chr2	13760340	13760341	1
Deletion	Chr11	14523999	14524000	1
Deletion	Chr1	20009886	20009890	4
Deletion	Chr10	22503597	22503598	1
Deletion	Chr10	22680916	22680918	2
Deletion	Chr2	25057569	25057571	2
Deletion	Chr2	31074101	31074102	1
Deletion	Chr4	33880971	33880978	7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	8667984	Chr1	17284479

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes