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Mutant Information

Mutant Name	FN747-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN747-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 39

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1402273 C-G Homo INTERGENIC
SBS Chr1 6020427 G-A Hetero INTERGENIC
SBS Chr1 15352309 C-G Hetero INTERGENIC
SBS Chr1 19286391 G-A Hetero INTRON
SBS Chr1 20958703 G-A Hetero SYNONYMOUS_CODING
SBS Chr1 36684810 C-T Homo INTERGENIC
SBS Chr2 17275558 A-G Homo INTERGENIC
SBS Chr2 24526422 G-A Homo INTERGENIC
SBS Chr2 31787395 G-A Homo UTR_5_PRIME
SBS Chr3 7372103 C-T Homo INTERGENIC
SBS Chr3 18050388 C-T Hetero INTERGENIC
SBS Chr3 29833063 G-A Homo INTERGENIC
SBS Chr3 30321700 G-T Hetero INTERGENIC
SBS Chr3 35194868 C-T Hetero INTERGENIC
SBS Chr4 18804968 G-A Hetero INTERGENIC
SBS Chr5 14444098 T-C Hetero INTERGENIC
SBS Chr5 20952177 G-A Hetero INTRON
SBS Chr5 24084689 C-T Homo INTERGENIC
SBS Chr6 2667625 G-A Hetero INTERGENIC
SBS Chr6 5783262 G-A Hetero INTERGENIC
SBS Chr6 13704146 C-T Hetero INTERGENIC
SBS Chr6 19379058 A-G Hetero INTERGENIC
SBS Chr7 21468884 A-G Hetero INTRON
SBS Chr8 9226313 G-A Hetero INTERGENIC
SBS Chr8 13040193 C-A Hetero INTERGENIC
SBS Chr8 14215605 A-T Hetero INTERGENIC
SBS Chr9 318527 A-T Hetero INTERGENIC
SBS Chr9 7462506 C-A Hetero INTERGENIC
SBS Chr10 4855163 A-G Hetero INTERGENIC
SBS Chr10 4889773 G-T Hetero INTERGENIC
SBS Chr10 13029077 C-T Hetero INTERGENIC
SBS Chr10 20277015 C-A Hetero INTERGENIC
SBS Chr11 11118099 A-T Hetero INTERGENIC
SBS Chr11 12251673 G-A Hetero INTERGENIC
SBS Chr12 2390460 A-T Hetero SPLICE_SITE_REGION
SBS Chr12 14433212 G-A Hetero INTERGENIC
SBS Chr12 18482132 A-T Hetero INTERGENIC
SBS Chr12 22813930 G-A Hetero INTRON
SBS Chr12 25151075 T-C Homo INTERGENIC

Deletions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 3091014 3091018 4
Deletion Chr12 3632001 3646000 13999 3
Deletion Chr2 11561151 11561162 11
Deletion Chr11 19013479 19013481 2
Deletion Chr8 21455892 21455893 1
Deletion Chr4 36028001 36046000 17999 5

Insertions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 19697675 19697678 2
Insertion Chr5 134834 134839 4
Insertion Chr8 236934 236937 2
Insertion Chr11 10035939 10035942 2
Insertion Chr12 19594244 19594247 2
Insertion Chr2 28849671 28849673 1
Insertion Chr6 89620 89623 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 11403958 11531251
Inversion Chr11 11403965 11531262

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1402273	C-G	Homo	INTERGENIC
SBS	Chr1	6020427	G-A	Hetero	INTERGENIC
SBS	Chr1	15352309	C-G	Hetero	INTERGENIC
SBS	Chr1	19286391	G-A	Hetero	INTRON
SBS	Chr1	20958703	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr1	36684810	C-T	Homo	INTERGENIC
SBS	Chr2	17275558	A-G	Homo	INTERGENIC
SBS	Chr2	24526422	G-A	Homo	INTERGENIC
SBS	Chr2	31787395	G-A	Homo	UTR_5_PRIME
SBS	Chr3	7372103	C-T	Homo	INTERGENIC
SBS	Chr3	18050388	C-T	Hetero	INTERGENIC
SBS	Chr3	29833063	G-A	Homo	INTERGENIC
SBS	Chr3	30321700	G-T	Hetero	INTERGENIC
SBS	Chr3	35194868	C-T	Hetero	INTERGENIC
SBS	Chr4	18804968	G-A	Hetero	INTERGENIC
SBS	Chr5	14444098	T-C	Hetero	INTERGENIC
SBS	Chr5	20952177	G-A	Hetero	INTRON
SBS	Chr5	24084689	C-T	Homo	INTERGENIC
SBS	Chr6	2667625	G-A	Hetero	INTERGENIC
SBS	Chr6	5783262	G-A	Hetero	INTERGENIC
SBS	Chr6	13704146	C-T	Hetero	INTERGENIC
SBS	Chr6	19379058	A-G	Hetero	INTERGENIC
SBS	Chr7	21468884	A-G	Hetero	INTRON
SBS	Chr8	9226313	G-A	Hetero	INTERGENIC
SBS	Chr8	13040193	C-A	Hetero	INTERGENIC
SBS	Chr8	14215605	A-T	Hetero	INTERGENIC
SBS	Chr9	318527	A-T	Hetero	INTERGENIC
SBS	Chr9	7462506	C-A	Hetero	INTERGENIC
SBS	Chr10	4855163	A-G	Hetero	INTERGENIC
SBS	Chr10	4889773	G-T	Hetero	INTERGENIC
SBS	Chr10	13029077	C-T	Hetero	INTERGENIC
SBS	Chr10	20277015	C-A	Hetero	INTERGENIC
SBS	Chr11	11118099	A-T	Hetero	INTERGENIC
SBS	Chr11	12251673	G-A	Hetero	INTERGENIC
SBS	Chr12	2390460	A-T	Hetero	SPLICE_SITE_REGION
SBS	Chr12	14433212	G-A	Hetero	INTERGENIC
SBS	Chr12	18482132	A-T	Hetero	INTERGENIC
SBS	Chr12	22813930	G-A	Hetero	INTRON
SBS	Chr12	25151075	T-C	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	3091014	3091018	4
Deletion	Chr12	3632001	3646000	13999	3
Deletion	Chr2	11561151	11561162	11
Deletion	Chr11	19013479	19013481	2
Deletion	Chr8	21455892	21455893	1
Deletion	Chr4	36028001	36046000	17999	5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	11403958	11531251
Inversion	Chr11	11403965	11531262

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes