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Mutant Information

Mutant Name	FN748-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN748-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 39

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1317130 T-C Hetero INTERGENIC
SBS Chr1 9765356 C-G Homo INTERGENIC
SBS Chr1 17576738 T-C Hetero INTRON
SBS Chr1 18172009 T-C Hetero INTERGENIC
SBS Chr1 20063474 C-T Hetero INTERGENIC
SBS Chr1 20157720 A-T Hetero INTERGENIC
SBS Chr1 33257920 A-G Hetero INTERGENIC
SBS Chr2 11453115 A-G Hetero INTERGENIC
SBS Chr2 15027377 C-A Hetero INTERGENIC
SBS Chr2 15424643 T-C Hetero INTERGENIC
SBS Chr2 15424644 G-A Hetero INTERGENIC
SBS Chr2 15439722 A-G Hetero INTRON
SBS Chr3 25294267 C-T Hetero INTERGENIC
SBS Chr3 25430931 C-T Homo INTERGENIC
SBS Chr3 29108910 C-T Hetero INTERGENIC
SBS Chr3 35693058 G-A Hetero INTERGENIC
SBS Chr4 27297308 T-C Hetero INTERGENIC
SBS Chr4 30610087 A-C Hetero INTRON
SBS Chr4 31999878 C-A Hetero INTERGENIC
SBS Chr4 31999880 C-A Hetero INTERGENIC
SBS Chr5 9414184 G-T Hetero INTERGENIC
SBS Chr5 20054019 T-G Hetero INTERGENIC
SBS Chr5 26976194 T-C Homo INTERGENIC
SBS Chr6 6052707 A-T Homo INTERGENIC
SBS Chr6 28340644 C-G Hetero INTERGENIC
SBS Chr7 7936973 A-T Hetero INTRON
SBS Chr7 8349770 G-T Homo NON_SYNONYMOUS_CODING OsKitaake07g090850
SBS Chr7 18377403 G-A Homo UTR_5_PRIME
SBS Chr9 5894336 T-C Hetero INTERGENIC
SBS Chr9 7264847 A-T Hetero INTERGENIC
SBS Chr9 8160405 A-C Homo INTERGENIC
SBS Chr10 8276444 A-T Hetero INTERGENIC
SBS Chr10 8276445 G-T Hetero INTERGENIC
SBS Chr10 17371895 C-A Hetero INTERGENIC
SBS Chr10 21133559 C-A Hetero INTERGENIC
SBS Chr11 5786565 G-A Homo INTERGENIC
SBS Chr11 6666379 A-T Homo INTERGENIC
SBS Chr11 10093535 T-A Homo INTERGENIC
SBS Chr11 12787467 T-A Homo INTERGENIC

Deletions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 6092606 6092625 19
Deletion Chr1 10116955 10116956 1
Deletion Chr11 11405062 11405065 3
Deletion Chr6 14856001 14928000 71999 5
Deletion Chr12 17806149 17806150 1
Deletion Chr12 19582289 19582291 2
Deletion Chr11 20840600 20840611 11
Deletion Chr2 22964001 23060000 95999 17

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 12873153 13352050
Inversion Chr11 12873159 13352058

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 12244261 Chr4 9660958

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1317130	T-C	Hetero	INTERGENIC
SBS	Chr1	9765356	C-G	Homo	INTERGENIC
SBS	Chr1	17576738	T-C	Hetero	INTRON
SBS	Chr1	18172009	T-C	Hetero	INTERGENIC
SBS	Chr1	20063474	C-T	Hetero	INTERGENIC
SBS	Chr1	20157720	A-T	Hetero	INTERGENIC
SBS	Chr1	33257920	A-G	Hetero	INTERGENIC
SBS	Chr2	11453115	A-G	Hetero	INTERGENIC
SBS	Chr2	15027377	C-A	Hetero	INTERGENIC
SBS	Chr2	15424643	T-C	Hetero	INTERGENIC
SBS	Chr2	15424644	G-A	Hetero	INTERGENIC
SBS	Chr2	15439722	A-G	Hetero	INTRON
SBS	Chr3	25294267	C-T	Hetero	INTERGENIC
SBS	Chr3	25430931	C-T	Homo	INTERGENIC
SBS	Chr3	29108910	C-T	Hetero	INTERGENIC
SBS	Chr3	35693058	G-A	Hetero	INTERGENIC
SBS	Chr4	27297308	T-C	Hetero	INTERGENIC
SBS	Chr4	30610087	A-C	Hetero	INTRON
SBS	Chr4	31999878	C-A	Hetero	INTERGENIC
SBS	Chr4	31999880	C-A	Hetero	INTERGENIC
SBS	Chr5	9414184	G-T	Hetero	INTERGENIC
SBS	Chr5	20054019	T-G	Hetero	INTERGENIC
SBS	Chr5	26976194	T-C	Homo	INTERGENIC
SBS	Chr6	6052707	A-T	Homo	INTERGENIC
SBS	Chr6	28340644	C-G	Hetero	INTERGENIC
SBS	Chr7	7936973	A-T	Hetero	INTRON
SBS	Chr7	8349770	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake07g090850
SBS	Chr7	18377403	G-A	Homo	UTR_5_PRIME
SBS	Chr9	5894336	T-C	Hetero	INTERGENIC
SBS	Chr9	7264847	A-T	Hetero	INTERGENIC
SBS	Chr9	8160405	A-C	Homo	INTERGENIC
SBS	Chr10	8276444	A-T	Hetero	INTERGENIC
SBS	Chr10	8276445	G-T	Hetero	INTERGENIC
SBS	Chr10	17371895	C-A	Hetero	INTERGENIC
SBS	Chr10	21133559	C-A	Hetero	INTERGENIC
SBS	Chr11	5786565	G-A	Homo	INTERGENIC
SBS	Chr11	6666379	A-T	Homo	INTERGENIC
SBS	Chr11	10093535	T-A	Homo	INTERGENIC
SBS	Chr11	12787467	T-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	6092606	6092625	19
Deletion	Chr1	10116955	10116956	1
Deletion	Chr11	11405062	11405065	3
Deletion	Chr6	14856001	14928000	71999	5
Deletion	Chr12	17806149	17806150	1
Deletion	Chr12	19582289	19582291	2
Deletion	Chr11	20840600	20840611	11
Deletion	Chr2	22964001	23060000	95999	17

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	12873153	13352050
Inversion	Chr11	12873159	13352058

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes