Search Kitaake

Mutant Information

Mutant Name	FN750-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN750-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 28

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr2 4110529 A-G Hetero INTRON
SBS Chr2 15410463 C-T Hetero INTERGENIC
SBS Chr2 27215766 G-T Homo INTERGENIC
SBS Chr2 31609190 C-T Hetero INTERGENIC
SBS Chr3 14845966 G-A Homo INTERGENIC
SBS Chr3 17662126 G-T Hetero UTR_5_PRIME
SBS Chr3 21939346 A-G Hetero INTERGENIC
SBS Chr3 26484847 C-T Homo SYNONYMOUS_CODING
SBS Chr5 20679141 G-A Hetero INTRON
SBS Chr5 21290966 T-C Hetero INTERGENIC
SBS Chr5 27544331 T-A Homo INTERGENIC
SBS Chr5 27544332 T-A Homo INTERGENIC
SBS Chr5 27544333 C-A Homo INTERGENIC
SBS Chr6 24396944 T-C Homo INTERGENIC
SBS Chr6 29953372 T-A Hetero INTERGENIC
SBS Chr7 2175692 G-C Homo INTERGENIC
SBS Chr7 2224371 C-T Homo NON_SYNONYMOUS_CODING OsKitaake07g031100
SBS Chr7 3661527 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake07g047000
SBS Chr7 20968458 T-C Homo INTERGENIC
SBS Chr7 27235034 G-A Homo INTERGENIC
SBS Chr7 29591649 C-T Homo INTERGENIC
SBS Chr8 2316900 C-T Hetero INTERGENIC
SBS Chr9 19469725 T-C Hetero INTERGENIC
SBS Chr10 7409808 G-A Homo INTERGENIC
SBS Chr10 12679047 A-G Homo INTERGENIC
SBS Chr10 18980881 G-A Homo INTRON
SBS Chr11 6633907 T-A Homo INTERGENIC
SBS Chr12 22380253 T-A Hetero INTERGENIC

Deletions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 6686003 6686105 102
Deletion Chr2 10266413 10266415 2
Deletion Chr11 10844242 10844249 7
Deletion Chr10 10872699 10872824 125
Deletion Chr4 11721632 11721634 2
Deletion Chr5 18420497 18420499 2
Deletion Chr10 18967245 18967251 6
Deletion Chr6 21598607 21598611 4
Deletion Chr4 30330284 30330292 8

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 27872045 27872049 3
Insertion Chr2 2142010 2142013 2
Insertion Chr2 29830062 29830065 2

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 3512636 3677964 OsKitaake11g048600
Inversion Chr11 5864160 5940244 OsKitaake11g072200
Inversion Chr11 5864171 5941697 OsKitaake11g072200
Inversion Chr6 10765725 10887258 OsKitaake06g120500
Inversion Chr6 10765727 10887262 OsKitaake06g120500

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 10898400 Chr2 19159005 OsKitaake02g187100
Translocation Chr10 10898584 Chr2 19159006 OsKitaake02g187100

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr2	4110529	A-G	Hetero	INTRON
SBS	Chr2	15410463	C-T	Hetero	INTERGENIC
SBS	Chr2	27215766	G-T	Homo	INTERGENIC
SBS	Chr2	31609190	C-T	Hetero	INTERGENIC
SBS	Chr3	14845966	G-A	Homo	INTERGENIC
SBS	Chr3	17662126	G-T	Hetero	UTR_5_PRIME
SBS	Chr3	21939346	A-G	Hetero	INTERGENIC
SBS	Chr3	26484847	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr5	20679141	G-A	Hetero	INTRON
SBS	Chr5	21290966	T-C	Hetero	INTERGENIC
SBS	Chr5	27544331	T-A	Homo	INTERGENIC
SBS	Chr5	27544332	T-A	Homo	INTERGENIC
SBS	Chr5	27544333	C-A	Homo	INTERGENIC
SBS	Chr6	24396944	T-C	Homo	INTERGENIC
SBS	Chr6	29953372	T-A	Hetero	INTERGENIC
SBS	Chr7	2175692	G-C	Homo	INTERGENIC
SBS	Chr7	2224371	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake07g031100
SBS	Chr7	3661527	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g047000
SBS	Chr7	20968458	T-C	Homo	INTERGENIC
SBS	Chr7	27235034	G-A	Homo	INTERGENIC
SBS	Chr7	29591649	C-T	Homo	INTERGENIC
SBS	Chr8	2316900	C-T	Hetero	INTERGENIC
SBS	Chr9	19469725	T-C	Hetero	INTERGENIC
SBS	Chr10	7409808	G-A	Homo	INTERGENIC
SBS	Chr10	12679047	A-G	Homo	INTERGENIC
SBS	Chr10	18980881	G-A	Homo	INTRON
SBS	Chr11	6633907	T-A	Homo	INTERGENIC
SBS	Chr12	22380253	T-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	6686003	6686105	102
Deletion	Chr2	10266413	10266415	2
Deletion	Chr11	10844242	10844249	7
Deletion	Chr10	10872699	10872824	125
Deletion	Chr4	11721632	11721634	2
Deletion	Chr5	18420497	18420499	2
Deletion	Chr10	18967245	18967251	6
Deletion	Chr6	21598607	21598611	4
Deletion	Chr4	30330284	30330292	8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	3512636	3677964	OsKitaake11g048600
Inversion	Chr11	5864160	5940244	OsKitaake11g072200
Inversion	Chr11	5864171	5941697	OsKitaake11g072200
Inversion	Chr6	10765725	10887258	OsKitaake06g120500
Inversion	Chr6	10765727	10887262	OsKitaake06g120500

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes