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Mutant Information

Mutant Name	FN751-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN751-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 35

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1937112 G-A Hetero INTERGENIC
SBS Chr1 5684973 C-T Homo NON_SYNONYMOUS_CODING OsKitaake01g072600
SBS Chr2 9693938 A-G Hetero INTERGENIC
SBS Chr2 13059615 T-G Homo INTERGENIC
SBS Chr2 28686298 A-C Homo INTRON
SBS Chr3 639120 G-A Hetero INTERGENIC
SBS Chr3 639122 G-A Hetero INTERGENIC
SBS Chr3 19272491 C-T Homo INTERGENIC
SBS Chr3 22135723 T-G Homo INTRON
SBS Chr4 3272958 T-C Hetero INTERGENIC
SBS Chr4 3273072 A-G Hetero INTERGENIC
SBS Chr4 3470293 G-C Hetero INTERGENIC
SBS Chr4 3677425 A-G Hetero INTERGENIC
SBS Chr4 10646537 C-T Hetero INTERGENIC
SBS Chr4 21252186 T-G Hetero INTERGENIC
SBS Chr4 21659777 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake04g123200
SBS Chr5 10877080 A-T Hetero INTERGENIC
SBS Chr5 20311225 G-A Hetero SYNONYMOUS_CODING
SBS Chr5 23877363 C-A Hetero INTERGENIC
SBS Chr6 13992705 A-G Homo INTERGENIC
SBS Chr6 15428462 C-T Homo INTERGENIC
SBS Chr6 18188527 T-C Hetero INTRON
SBS Chr7 22071938 G-T Hetero INTERGENIC
SBS Chr7 22071939 G-T Hetero INTERGENIC
SBS Chr8 15213585 A-T Homo INTERGENIC
SBS Chr8 28245314 C-G Homo INTRON
SBS Chr9 4746112 C-T Hetero INTERGENIC
SBS Chr9 11518225 G-A Homo INTRON
SBS Chr10 3716387 G-C Hetero INTERGENIC
SBS Chr10 15830196 C-T Hetero INTERGENIC
SBS Chr10 23872753 T-G Hetero INTERGENIC
SBS Chr11 12620492 G-T Homo INTERGENIC
SBS Chr11 13395408 C-T Homo INTERGENIC
SBS Chr12 12846362 C-T Hetero INTERGENIC
SBS Chr12 20673619 T-A Hetero INTERGENIC

Deletions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 6618197 6618198 1
Deletion Chr12 7641248 7641253 5
Deletion Chr2 9592961 9592963 2
Deletion Chr10 11298714 11298716 2
Deletion Chr7 18491772 18491773 1 OsKitaake07g150200
Deletion Chr2 19906915 19906921 6 OsKitaake02g194200
Deletion Chr1 40532503 40532511 8

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 36329726 36329729 2
Insertion Chr6 609997 610000 2
Insertion Chr6 20803982 20803991 8
Insertion Chr10 5480838 5480841 2
Insertion Chr12 22125892 22125895 2
Insertion Chr9 2667591 2667595 3

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 8411478 8669589 OsKitaake11g091700
Inversion Chr2 22469144 22968025
Inversion Chr1 22707122 22937733 OsKitaake01g217100

Translocations: 7

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr5 7702643 Chr1 22708136 OsKitaake01g217100
Translocation Chr5 7702657 Chr1 22707474 OsKitaake01g217100
Translocation Chr8 8405575 Chr3 10399009
Translocation Chr5 11027448 Chr2 31287115 2
Translocation Chr5 11027452 Chr2 31288370 2
Translocation Chr4 14394290 Chr1 26784385
Translocation Chr6 27779271 Chr1 22709202 OsKitaake01g217100

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1937112	G-A	Hetero	INTERGENIC
SBS	Chr1	5684973	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g072600
SBS	Chr2	9693938	A-G	Hetero	INTERGENIC
SBS	Chr2	13059615	T-G	Homo	INTERGENIC
SBS	Chr2	28686298	A-C	Homo	INTRON
SBS	Chr3	639120	G-A	Hetero	INTERGENIC
SBS	Chr3	639122	G-A	Hetero	INTERGENIC
SBS	Chr3	19272491	C-T	Homo	INTERGENIC
SBS	Chr3	22135723	T-G	Homo	INTRON
SBS	Chr4	3272958	T-C	Hetero	INTERGENIC
SBS	Chr4	3273072	A-G	Hetero	INTERGENIC
SBS	Chr4	3470293	G-C	Hetero	INTERGENIC
SBS	Chr4	3677425	A-G	Hetero	INTERGENIC
SBS	Chr4	10646537	C-T	Hetero	INTERGENIC
SBS	Chr4	21252186	T-G	Hetero	INTERGENIC
SBS	Chr4	21659777	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g123200
SBS	Chr5	10877080	A-T	Hetero	INTERGENIC
SBS	Chr5	20311225	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr5	23877363	C-A	Hetero	INTERGENIC
SBS	Chr6	13992705	A-G	Homo	INTERGENIC
SBS	Chr6	15428462	C-T	Homo	INTERGENIC
SBS	Chr6	18188527	T-C	Hetero	INTRON
SBS	Chr7	22071938	G-T	Hetero	INTERGENIC
SBS	Chr7	22071939	G-T	Hetero	INTERGENIC
SBS	Chr8	15213585	A-T	Homo	INTERGENIC
SBS	Chr8	28245314	C-G	Homo	INTRON
SBS	Chr9	4746112	C-T	Hetero	INTERGENIC
SBS	Chr9	11518225	G-A	Homo	INTRON
SBS	Chr10	3716387	G-C	Hetero	INTERGENIC
SBS	Chr10	15830196	C-T	Hetero	INTERGENIC
SBS	Chr10	23872753	T-G	Hetero	INTERGENIC
SBS	Chr11	12620492	G-T	Homo	INTERGENIC
SBS	Chr11	13395408	C-T	Homo	INTERGENIC
SBS	Chr12	12846362	C-T	Hetero	INTERGENIC
SBS	Chr12	20673619	T-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	6618197	6618198	1
Deletion	Chr12	7641248	7641253	5
Deletion	Chr2	9592961	9592963	2
Deletion	Chr10	11298714	11298716	2
Deletion	Chr7	18491772	18491773	1	OsKitaake07g150200
Deletion	Chr2	19906915	19906921	6	OsKitaake02g194200
Deletion	Chr1	40532503	40532511	8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	8411478	8669589	OsKitaake11g091700
Inversion	Chr2	22469144	22968025
Inversion	Chr1	22707122	22937733	OsKitaake01g217100

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes