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Mutant Information

Mutant Name	FN752-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN752-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 24

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 10199306 C-T Homo INTERGENIC
SBS Chr1 10199314 C-T Homo INTERGENIC
SBS Chr1 31092639 T-G Hetero INTERGENIC
SBS Chr1 41139395 C-T Homo NON_SYNONYMOUS_CODING OsKitaake01g449100
SBS Chr1 43174791 C-A Homo INTERGENIC
SBS Chr1 44165630 A-G Homo INTERGENIC
SBS Chr2 7442983 A-G Hetero INTERGENIC
SBS Chr2 27812525 T-C Hetero INTERGENIC
SBS Chr4 8004736 G-A Homo INTERGENIC
SBS Chr4 11592706 C-T Hetero INTERGENIC
SBS Chr5 7140873 T-C Hetero INTERGENIC
SBS Chr5 7140876 T-A Hetero INTERGENIC
SBS Chr5 7669968 A-C Hetero INTERGENIC
SBS Chr6 20982101 T-G Hetero INTERGENIC
SBS Chr6 29605310 C-T Homo INTERGENIC
SBS Chr7 8252392 C-T Hetero INTERGENIC
SBS Chr8 25838586 C-T Hetero INTERGENIC
SBS Chr10 19864397 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake10g148500
SBS Chr11 9252902 G-A Homo INTERGENIC
SBS Chr11 25712330 C-T Hetero INTERGENIC
SBS Chr12 15908643 C-T Hetero INTERGENIC
SBS Chr12 18005325 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake12g132300
SBS Chr12 22071377 C-T Hetero INTERGENIC
SBS Chr12 22463120 G-A Hetero INTERGENIC

Deletions: 27

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 2704318 2704327 9
Deletion Chr6 4702310 4702313 3
Deletion Chr2 6057068 6057071 3
Deletion Chr10 8780811 8780814 3
Deletion Chr5 8942434 8942435 1
Deletion Chr2 9360539 9360545 6
Deletion Chr10 9925961 9925985 24
Deletion Chr8 10396214 10396215 1
Deletion Chr6 10744129 10744140 11
Deletion Chr3 13053394 13053400 6
Deletion Chr4 13606381 13606385 4
Deletion Chr5 14613322 14613323 1
Deletion Chr6 15049335 15049336 1
Deletion Chr1 15589689 15589695 6
Deletion Chr3 16408666 16408667 1
Deletion Chr11 18494884 18494892 8
Deletion Chr6 23659266 23659272 6
Deletion Chr12 23685873 23685874 1
Deletion Chr3 24631503 24631505 2
Deletion Chr3 25244549 25244554 5
Deletion Chr11 26269001 26388000 118999 16
Deletion Chr3 28087546 28087557 11
Deletion Chr7 28346703 28346705 2 2
Deletion Chr2 29510790 29510801 11
Deletion Chr5 30227817 30228169 352
Deletion Chr6 30428173 30428174 1 OsKitaake06g286000
Deletion Chr4 32751271 32751274 3

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 8265625 8265628 2
Insertion Chr3 7356859 7356862 2
Insertion Chr4 31416299 31416302 2
Insertion Chr7 28346703 28346707 3

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10199306	C-T	Homo	INTERGENIC
SBS	Chr1	10199314	C-T	Homo	INTERGENIC
SBS	Chr1	31092639	T-G	Hetero	INTERGENIC
SBS	Chr1	41139395	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g449100
SBS	Chr1	43174791	C-A	Homo	INTERGENIC
SBS	Chr1	44165630	A-G	Homo	INTERGENIC
SBS	Chr2	7442983	A-G	Hetero	INTERGENIC
SBS	Chr2	27812525	T-C	Hetero	INTERGENIC
SBS	Chr4	8004736	G-A	Homo	INTERGENIC
SBS	Chr4	11592706	C-T	Hetero	INTERGENIC
SBS	Chr5	7140873	T-C	Hetero	INTERGENIC
SBS	Chr5	7140876	T-A	Hetero	INTERGENIC
SBS	Chr5	7669968	A-C	Hetero	INTERGENIC
SBS	Chr6	20982101	T-G	Hetero	INTERGENIC
SBS	Chr6	29605310	C-T	Homo	INTERGENIC
SBS	Chr7	8252392	C-T	Hetero	INTERGENIC
SBS	Chr8	25838586	C-T	Hetero	INTERGENIC
SBS	Chr10	19864397	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g148500
SBS	Chr11	9252902	G-A	Homo	INTERGENIC
SBS	Chr11	25712330	C-T	Hetero	INTERGENIC
SBS	Chr12	15908643	C-T	Hetero	INTERGENIC
SBS	Chr12	18005325	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g132300
SBS	Chr12	22071377	C-T	Hetero	INTERGENIC
SBS	Chr12	22463120	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	2704318	2704327	9
Deletion	Chr6	4702310	4702313	3
Deletion	Chr2	6057068	6057071	3
Deletion	Chr10	8780811	8780814	3
Deletion	Chr5	8942434	8942435	1
Deletion	Chr2	9360539	9360545	6
Deletion	Chr10	9925961	9925985	24
Deletion	Chr8	10396214	10396215	1
Deletion	Chr6	10744129	10744140	11
Deletion	Chr3	13053394	13053400	6
Deletion	Chr4	13606381	13606385	4
Deletion	Chr5	14613322	14613323	1
Deletion	Chr6	15049335	15049336	1
Deletion	Chr1	15589689	15589695	6
Deletion	Chr3	16408666	16408667	1
Deletion	Chr11	18494884	18494892	8
Deletion	Chr6	23659266	23659272	6
Deletion	Chr12	23685873	23685874	1
Deletion	Chr3	24631503	24631505	2
Deletion	Chr3	25244549	25244554	5
Deletion	Chr11	26269001	26388000	118999	16
Deletion	Chr3	28087546	28087557	11
Deletion	Chr7	28346703	28346705	2	2
Deletion	Chr2	29510790	29510801	11
Deletion	Chr5	30227817	30228169	352
Deletion	Chr6	30428173	30428174	1	OsKitaake06g286000
Deletion	Chr4	32751271	32751274	3

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes