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Mutant Information

Mutant Name	FN783-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN783-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Low (Between 25% and 75%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 17

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 11570937 G-A Hetero INTERGENIC
SBS Chr3 19507574 C-T Hetero INTERGENIC
SBS Chr3 19516184 C-T Hetero INTERGENIC
SBS Chr4 8510736 G-A Hetero INTERGENIC
SBS Chr4 18497192 G-A Hetero INTERGENIC
SBS Chr4 26966126 C-T Hetero UTR_5_PRIME
SBS Chr5 437078 T-A Hetero INTRON
SBS Chr5 11159127 A-G Homo INTRON
SBS Chr6 14912888 G-A Homo INTERGENIC
SBS Chr7 4387330 C-T Homo INTERGENIC
SBS Chr7 9292566 C-T Hetero INTERGENIC
SBS Chr8 15069567 C-T Homo INTERGENIC
SBS Chr8 26171414 G-T Hetero UTR_5_PRIME
SBS Chr8 27619773 T-C Homo NON_SYNONYMOUS_CODING OsKitaake08g232300
SBS Chr11 17062853 T-C Hetero INTRON
SBS Chr11 19925709 T-C Homo INTERGENIC
SBS Chr11 27265689 A-T Hetero INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 2852458 2852459 1
Deletion Chr11 9153143 9153145 2
Deletion Chr6 11178557 11178559 2
Deletion Chr1 14625059 14625074 15
Deletion Chr11 16132914 16132919 5
Deletion Chr1 18238627 18238632 5
Deletion Chr8 18765067 18765069 2
Deletion Chr3 18889001 18900000 10999 3
Deletion Chr3 20043928 20044236 308
Deletion Chr5 22662870 22662872 2
Deletion Chr6 22763869 22763871 2
Deletion Chr8 24936785 24936804 19
Deletion Chr1 33032408 33032414 6

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr12 21032585 21032588 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 19087301 19648279 OsKitaake08g144400
Inversion Chr8 19087313 19648287 OsKitaake08g144400

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 24942742 Chr5 2000404

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11570937	G-A	Hetero	INTERGENIC
SBS	Chr3	19507574	C-T	Hetero	INTERGENIC
SBS	Chr3	19516184	C-T	Hetero	INTERGENIC
SBS	Chr4	8510736	G-A	Hetero	INTERGENIC
SBS	Chr4	18497192	G-A	Hetero	INTERGENIC
SBS	Chr4	26966126	C-T	Hetero	UTR_5_PRIME
SBS	Chr5	437078	T-A	Hetero	INTRON
SBS	Chr5	11159127	A-G	Homo	INTRON
SBS	Chr6	14912888	G-A	Homo	INTERGENIC
SBS	Chr7	4387330	C-T	Homo	INTERGENIC
SBS	Chr7	9292566	C-T	Hetero	INTERGENIC
SBS	Chr8	15069567	C-T	Homo	INTERGENIC
SBS	Chr8	26171414	G-T	Hetero	UTR_5_PRIME
SBS	Chr8	27619773	T-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake08g232300
SBS	Chr11	17062853	T-C	Hetero	INTRON
SBS	Chr11	19925709	T-C	Homo	INTERGENIC
SBS	Chr11	27265689	A-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	2852458	2852459	1
Deletion	Chr11	9153143	9153145	2
Deletion	Chr6	11178557	11178559	2
Deletion	Chr1	14625059	14625074	15
Deletion	Chr11	16132914	16132919	5
Deletion	Chr1	18238627	18238632	5
Deletion	Chr8	18765067	18765069	2
Deletion	Chr3	18889001	18900000	10999	3
Deletion	Chr3	20043928	20044236	308
Deletion	Chr5	22662870	22662872	2
Deletion	Chr6	22763869	22763871	2
Deletion	Chr8	24936785	24936804	19
Deletion	Chr1	33032408	33032414	6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	19087301	19648279	OsKitaake08g144400
Inversion	Chr8	19087313	19648287	OsKitaake08g144400

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes