Search Kitaake

Mutant Information

Mutant Name	FN789-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN789-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 29

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr2 11809852 G-A Hetero INTRON
SBS Chr2 12548274 G-A Hetero UTR_3_PRIME
SBS Chr2 18769483 T-A Hetero INTERGENIC
SBS Chr3 7983178 G-T Homo INTERGENIC
SBS Chr3 22504005 A-T Hetero INTERGENIC
SBS Chr4 28041731 A-T Homo INTERGENIC
SBS Chr4 28818515 C-A Homo INTERGENIC
SBS Chr5 12170535 C-T Homo INTERGENIC
SBS Chr7 12256876 C-T Hetero INTERGENIC
SBS Chr7 13853563 C-T Hetero INTERGENIC
SBS Chr8 9886410 T-C Hetero INTERGENIC
SBS Chr8 19394613 C-T Homo INTERGENIC
SBS Chr9 1909134 C-A Hetero INTERGENIC
SBS Chr9 17614403 T-A Homo NON_SYNONYMOUS_CODING OsKitaake09g133200
SBS Chr9 20221922 A-G Homo UTR_3_PRIME
SBS Chr10 7447899 C-T Hetero INTERGENIC
SBS Chr10 7503982 A-T Homo INTRON
SBS Chr10 15254033 T-A Hetero INTERGENIC
SBS Chr10 15924114 G-A Hetero INTERGENIC
SBS Chr10 19098996 G-A Homo INTERGENIC
SBS Chr11 14093777 C-G Hetero INTRON
SBS Chr11 25590206 T-C Hetero INTERGENIC
SBS Chr11 26645616 C-G Hetero INTERGENIC
SBS Chr12 202530 A-T Hetero INTERGENIC
SBS Chr12 513737 C-T Hetero INTERGENIC
SBS Chr12 15997201 A-C Hetero INTERGENIC
SBS Chr12 18042743 G-T Hetero INTERGENIC
SBS Chr12 19066397 G-A Homo INTERGENIC
SBS Chr12 24585481 G-A Homo INTERGENIC

Deletions: 23

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 1694196 1694197 1
Deletion Chr5 2524121 2524123 2
Deletion Chr10 4056965 4056970 5
Deletion Chr8 7874001 8148000 273999 25
Deletion Chr12 8327979 8327981 2
Deletion Chr3 10696522 10696524 2
Deletion Chr1 11187001 11222000 34999 OsKitaake01g137600
Deletion Chr6 11635414 11635416 2
Deletion Chr12 14077826 14077830 4
Deletion Chr3 14250643 14250649 6
Deletion Chr3 16739732 16739904 172
Deletion Chr1 17283622 17284286 664
Deletion Chr9 18054810 18054818 8
Deletion Chr9 19678957 19678977 20
Deletion Chr12 22048096 22048102 6
Deletion Chr12 23112100 23112101 1
Deletion Chr11 23155137 23155138 1
Deletion Chr7 24916913 24916914 1
Deletion Chr11 25582049 25582050 1
Deletion Chr5 25900449 25900465 16
Deletion Chr11 27953368 27953377 9
Deletion Chr2 30134001 30470000 335999 46
Deletion Chr1 40614395 40614400 5

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 12032838 12032841 2
Insertion Chr6 20875897 20875899 1

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 1399573 1401076
Inversion Chr10 1399577 1401081
Inversion Chr1 3809340 3927825 2
Inversion Chr1 3927845 3942483 OsKitaake01g052900

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 7898829 Chr1 3942483
Translocation Chr7 20614241 Chr4 16058412
Translocation Chr7 20614244 Chr4 16057857

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr2	11809852	G-A	Hetero	INTRON
SBS	Chr2	12548274	G-A	Hetero	UTR_3_PRIME
SBS	Chr2	18769483	T-A	Hetero	INTERGENIC
SBS	Chr3	7983178	G-T	Homo	INTERGENIC
SBS	Chr3	22504005	A-T	Hetero	INTERGENIC
SBS	Chr4	28041731	A-T	Homo	INTERGENIC
SBS	Chr4	28818515	C-A	Homo	INTERGENIC
SBS	Chr5	12170535	C-T	Homo	INTERGENIC
SBS	Chr7	12256876	C-T	Hetero	INTERGENIC
SBS	Chr7	13853563	C-T	Hetero	INTERGENIC
SBS	Chr8	9886410	T-C	Hetero	INTERGENIC
SBS	Chr8	19394613	C-T	Homo	INTERGENIC
SBS	Chr9	1909134	C-A	Hetero	INTERGENIC
SBS	Chr9	17614403	T-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake09g133200
SBS	Chr9	20221922	A-G	Homo	UTR_3_PRIME
SBS	Chr10	7447899	C-T	Hetero	INTERGENIC
SBS	Chr10	7503982	A-T	Homo	INTRON
SBS	Chr10	15254033	T-A	Hetero	INTERGENIC
SBS	Chr10	15924114	G-A	Hetero	INTERGENIC
SBS	Chr10	19098996	G-A	Homo	INTERGENIC
SBS	Chr11	14093777	C-G	Hetero	INTRON
SBS	Chr11	25590206	T-C	Hetero	INTERGENIC
SBS	Chr11	26645616	C-G	Hetero	INTERGENIC
SBS	Chr12	202530	A-T	Hetero	INTERGENIC
SBS	Chr12	513737	C-T	Hetero	INTERGENIC
SBS	Chr12	15997201	A-C	Hetero	INTERGENIC
SBS	Chr12	18042743	G-T	Hetero	INTERGENIC
SBS	Chr12	19066397	G-A	Homo	INTERGENIC
SBS	Chr12	24585481	G-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	1694196	1694197	1
Deletion	Chr5	2524121	2524123	2
Deletion	Chr10	4056965	4056970	5
Deletion	Chr8	7874001	8148000	273999	25
Deletion	Chr12	8327979	8327981	2
Deletion	Chr3	10696522	10696524	2
Deletion	Chr1	11187001	11222000	34999	OsKitaake01g137600
Deletion	Chr6	11635414	11635416	2
Deletion	Chr12	14077826	14077830	4
Deletion	Chr3	14250643	14250649	6
Deletion	Chr3	16739732	16739904	172
Deletion	Chr1	17283622	17284286	664
Deletion	Chr9	18054810	18054818	8
Deletion	Chr9	19678957	19678977	20
Deletion	Chr12	22048096	22048102	6
Deletion	Chr12	23112100	23112101	1
Deletion	Chr11	23155137	23155138	1
Deletion	Chr7	24916913	24916914	1
Deletion	Chr11	25582049	25582050	1
Deletion	Chr5	25900449	25900465	16
Deletion	Chr11	27953368	27953377	9
Deletion	Chr2	30134001	30470000	335999	46
Deletion	Chr1	40614395	40614400	5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	1399573	1401076
Inversion	Chr10	1399577	1401081
Inversion	Chr1	3809340	3927825	2
Inversion	Chr1	3927845	3942483	OsKitaake01g052900

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes