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Mutant Information

Mutant Name	FN791-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN791-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000014 (Panicle Weight) = Normal (Between 75% and 125%) TO:0000207 (Plant height) = Normal (Between 75% and 125%) TO:0000445 (Seed Number) = Normal (Between 75% and 125%) TO:0000639 (Seed fertility) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 37

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 616075 A-T Hetero UTR_5_PRIME
SBS Chr1 3482723 G-A Homo INTERGENIC
SBS Chr1 17402877 C-A Hetero INTERGENIC
SBS Chr1 27050546 G-A Homo INTERGENIC
SBS Chr1 40933273 G-A Homo INTERGENIC
SBS Chr2 34202102 G-A Hetero INTERGENIC
SBS Chr2 34260847 G-A Homo INTERGENIC
SBS Chr4 17778154 C-T Homo INTERGENIC
SBS Chr4 32130288 G-A Hetero INTERGENIC
SBS Chr5 1111448 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake05g014000
SBS Chr5 1111451 G-T Hetero STOP_GAINED OsKitaake05g014000
SBS Chr5 7024931 T-C Hetero INTERGENIC
SBS Chr5 12891235 G-A Hetero INTERGENIC
SBS Chr5 12891236 A-C Hetero INTERGENIC
SBS Chr5 14691106 T-A Hetero INTERGENIC
SBS Chr5 21238799 G-A Hetero INTERGENIC
SBS Chr5 24569345 A-T Hetero INTERGENIC
SBS Chr6 480626 G-C Homo INTERGENIC
SBS Chr6 679014 C-T Homo INTRON
SBS Chr6 20443875 T-A Homo INTERGENIC
SBS Chr6 29335768 C-T Homo INTRON
SBS Chr6 30235835 G-A Homo INTERGENIC
SBS Chr7 7740803 G-A Homo INTRON
SBS Chr7 16633803 T-C Hetero INTERGENIC
SBS Chr7 19335570 G-T Homo UTR_3_PRIME
SBS Chr7 20669797 G-A Homo INTRON
SBS Chr7 28262172 C-G Homo NON_SYNONYMOUS_CODING OsKitaake07g267200
SBS Chr7 28262173 G-A Homo NON_SYNONYMOUS_CODING OsKitaake07g267200
SBS Chr8 13995283 G-A Homo INTERGENIC
SBS Chr8 28907813 C-T Hetero INTERGENIC
SBS Chr9 5400308 A-C Homo INTRON
SBS Chr10 4625333 T-A Hetero INTERGENIC
SBS Chr10 22703040 G-T Hetero UTR_5_PRIME
SBS Chr11 9205076 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake11g096900
SBS Chr11 9205077 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake11g096900
SBS Chr12 13681698 T-A Hetero INTERGENIC
SBS Chr12 24101534 A-G Hetero INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 2782448 2782451 3
Deletion Chr4 5066289 5066295 6
Deletion Chr10 8567728 8567733 5
Deletion Chr7 18227875 18227881 6 OsKitaake07g147300
Deletion Chr8 21279794 21279801 7
Deletion Chr11 23468658 23468661 3 OsKitaake11g187200
Deletion Chr2 24995748 24995751 3
Deletion Chr1 26680032 26680034 2
Deletion Chr7 28178128 28178134 6 OsKitaake07g265800
Deletion Chr3 32992781 32992782 1

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 24066826 24066829 2
Insertion Chr8 21359172 21359175 2
Insertion Chr9 10546258 10546261 2
Insertion Chr7 11995366 11995368 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 12335374 12656625
Inversion Chr4 12335388 12656693

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	616075	A-T	Hetero	UTR_5_PRIME
SBS	Chr1	3482723	G-A	Homo	INTERGENIC
SBS	Chr1	17402877	C-A	Hetero	INTERGENIC
SBS	Chr1	27050546	G-A	Homo	INTERGENIC
SBS	Chr1	40933273	G-A	Homo	INTERGENIC
SBS	Chr2	34202102	G-A	Hetero	INTERGENIC
SBS	Chr2	34260847	G-A	Homo	INTERGENIC
SBS	Chr4	17778154	C-T	Homo	INTERGENIC
SBS	Chr4	32130288	G-A	Hetero	INTERGENIC
SBS	Chr5	1111448	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g014000
SBS	Chr5	1111451	G-T	Hetero	STOP_GAINED	OsKitaake05g014000
SBS	Chr5	7024931	T-C	Hetero	INTERGENIC
SBS	Chr5	12891235	G-A	Hetero	INTERGENIC
SBS	Chr5	12891236	A-C	Hetero	INTERGENIC
SBS	Chr5	14691106	T-A	Hetero	INTERGENIC
SBS	Chr5	21238799	G-A	Hetero	INTERGENIC
SBS	Chr5	24569345	A-T	Hetero	INTERGENIC
SBS	Chr6	480626	G-C	Homo	INTERGENIC
SBS	Chr6	679014	C-T	Homo	INTRON
SBS	Chr6	20443875	T-A	Homo	INTERGENIC
SBS	Chr6	29335768	C-T	Homo	INTRON
SBS	Chr6	30235835	G-A	Homo	INTERGENIC
SBS	Chr7	7740803	G-A	Homo	INTRON
SBS	Chr7	16633803	T-C	Hetero	INTERGENIC
SBS	Chr7	19335570	G-T	Homo	UTR_3_PRIME
SBS	Chr7	20669797	G-A	Homo	INTRON
SBS	Chr7	28262172	C-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake07g267200
SBS	Chr7	28262173	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake07g267200
SBS	Chr8	13995283	G-A	Homo	INTERGENIC
SBS	Chr8	28907813	C-T	Hetero	INTERGENIC
SBS	Chr9	5400308	A-C	Homo	INTRON
SBS	Chr10	4625333	T-A	Hetero	INTERGENIC
SBS	Chr10	22703040	G-T	Hetero	UTR_5_PRIME
SBS	Chr11	9205076	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g096900
SBS	Chr11	9205077	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g096900
SBS	Chr12	13681698	T-A	Hetero	INTERGENIC
SBS	Chr12	24101534	A-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	2782448	2782451	3
Deletion	Chr4	5066289	5066295	6
Deletion	Chr10	8567728	8567733	5
Deletion	Chr7	18227875	18227881	6	OsKitaake07g147300
Deletion	Chr8	21279794	21279801	7
Deletion	Chr11	23468658	23468661	3	OsKitaake11g187200
Deletion	Chr2	24995748	24995751	3
Deletion	Chr1	26680032	26680034	2
Deletion	Chr7	28178128	28178134	6	OsKitaake07g265800
Deletion	Chr3	32992781	32992782	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	12335374	12656625
Inversion	Chr4	12335388	12656693

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes