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Mutant Information

Mutant Name	FN792-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN792-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Low (Between 25% and 75%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 32

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 119837 C-A Hetero INTERGENIC
SBS Chr1 4744692 C-T Homo NON_SYNONYMOUS_CODING OsKitaake01g063300
SBS Chr1 9332323 T-C Homo INTERGENIC
SBS Chr1 42240008 C-T Homo INTERGENIC
SBS Chr2 14269932 C-G Hetero INTERGENIC
SBS Chr2 28437427 G-C Hetero INTERGENIC
SBS Chr2 29407720 C-T Hetero INTERGENIC
SBS Chr3 3478816 G-T Hetero INTERGENIC
SBS Chr3 8533092 A-C Hetero INTERGENIC
SBS Chr4 4103520 T-A Homo INTERGENIC
SBS Chr4 6453367 T-C Hetero INTERGENIC
SBS Chr4 22757739 G-A Homo INTERGENIC
SBS Chr5 6849696 T-A Homo INTERGENIC
SBS Chr5 19683754 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake05g155200
SBS Chr5 20261287 A-G Hetero INTERGENIC
SBS Chr5 27027280 A-C Homo INTERGENIC
SBS Chr6 7283755 A-T Hetero INTERGENIC
SBS Chr6 12571044 G-T Homo NON_SYNONYMOUS_CODING OsKitaake06g134200
SBS Chr7 9241526 T-A Hetero INTERGENIC
SBS Chr7 16468906 C-T Homo INTERGENIC
SBS Chr7 16915690 T-A Homo INTERGENIC
SBS Chr7 18864556 A-T Homo INTERGENIC
SBS Chr7 22727514 A-G Hetero INTERGENIC
SBS Chr7 22761460 C-T Hetero UTR_3_PRIME
SBS Chr8 24882757 A-C Hetero INTERGENIC
SBS Chr9 2844407 G-A Hetero INTERGENIC
SBS Chr9 2844409 G-T Hetero INTERGENIC
SBS Chr9 5072168 C-T Hetero INTERGENIC
SBS Chr9 18664082 A-T Hetero INTERGENIC
SBS Chr10 18843185 G-T Hetero INTERGENIC
SBS Chr11 18350730 G-A Hetero INTERGENIC
SBS Chr12 3478761 T-C Hetero INTERGENIC

Deletions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 1347517 1347519 2
Deletion Chr4 3896583 3896585 2
Deletion Chr5 14701666 14701677 11
Deletion Chr5 15426733 15426735 2 OsKitaake05g118300
Deletion Chr1 21440868 21440869 1
Deletion Chr1 27075783 27075785 2

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 25762196 25762203 6
Insertion Chr5 28827037 28827040 2
Insertion Chr11 20467618 20467620 1 OsKitaake11g160300
Insertion Chr12 22079611 22079613 1

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 8224723 Chr2 35488079 OsKitaake02g372600
Translocation Chr12 8224724 Chr2 35490853 OsKitaake02g372700
Translocation Chr12 9005287 Chr6 11741093 OsKitaake06g128000
Translocation Chr12 9005728 Chr6 11741090 OsKitaake06g128000

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	119837	C-A	Hetero	INTERGENIC
SBS	Chr1	4744692	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g063300
SBS	Chr1	9332323	T-C	Homo	INTERGENIC
SBS	Chr1	42240008	C-T	Homo	INTERGENIC
SBS	Chr2	14269932	C-G	Hetero	INTERGENIC
SBS	Chr2	28437427	G-C	Hetero	INTERGENIC
SBS	Chr2	29407720	C-T	Hetero	INTERGENIC
SBS	Chr3	3478816	G-T	Hetero	INTERGENIC
SBS	Chr3	8533092	A-C	Hetero	INTERGENIC
SBS	Chr4	4103520	T-A	Homo	INTERGENIC
SBS	Chr4	6453367	T-C	Hetero	INTERGENIC
SBS	Chr4	22757739	G-A	Homo	INTERGENIC
SBS	Chr5	6849696	T-A	Homo	INTERGENIC
SBS	Chr5	19683754	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g155200
SBS	Chr5	20261287	A-G	Hetero	INTERGENIC
SBS	Chr5	27027280	A-C	Homo	INTERGENIC
SBS	Chr6	7283755	A-T	Hetero	INTERGENIC
SBS	Chr6	12571044	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g134200
SBS	Chr7	9241526	T-A	Hetero	INTERGENIC
SBS	Chr7	16468906	C-T	Homo	INTERGENIC
SBS	Chr7	16915690	T-A	Homo	INTERGENIC
SBS	Chr7	18864556	A-T	Homo	INTERGENIC
SBS	Chr7	22727514	A-G	Hetero	INTERGENIC
SBS	Chr7	22761460	C-T	Hetero	UTR_3_PRIME
SBS	Chr8	24882757	A-C	Hetero	INTERGENIC
SBS	Chr9	2844407	G-A	Hetero	INTERGENIC
SBS	Chr9	2844409	G-T	Hetero	INTERGENIC
SBS	Chr9	5072168	C-T	Hetero	INTERGENIC
SBS	Chr9	18664082	A-T	Hetero	INTERGENIC
SBS	Chr10	18843185	G-T	Hetero	INTERGENIC
SBS	Chr11	18350730	G-A	Hetero	INTERGENIC
SBS	Chr12	3478761	T-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	1347517	1347519	2
Deletion	Chr4	3896583	3896585	2
Deletion	Chr5	14701666	14701677	11
Deletion	Chr5	15426733	15426735	2	OsKitaake05g118300
Deletion	Chr1	21440868	21440869	1
Deletion	Chr1	27075783	27075785	2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	8224723	Chr2	35488079	OsKitaake02g372600
Translocation	Chr12	8224724	Chr2	35490853	OsKitaake02g372700
Translocation	Chr12	9005287	Chr6	11741093	OsKitaake06g128000
Translocation	Chr12	9005728	Chr6	11741090	OsKitaake06g128000

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes