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Mutant Information

Mutant Name	FN793-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN793-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 44

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 14427 T-A Homo INTERGENIC
SBS Chr1 14428 C-A Homo INTERGENIC
SBS Chr1 14985726 C-T Hetero INTERGENIC
SBS Chr1 28589817 A-G Hetero INTRON
SBS Chr1 28794764 A-G Hetero INTERGENIC
SBS Chr1 28794765 A-T Hetero INTERGENIC
SBS Chr1 28794766 A-T Hetero INTERGENIC
SBS Chr1 37744710 A-G Homo INTERGENIC
SBS Chr1 39537003 G-T Hetero INTERGENIC
SBS Chr2 6594451 T-C Hetero INTERGENIC
SBS Chr2 13321142 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake02g147700
SBS Chr2 14572605 G-A Hetero INTERGENIC
SBS Chr2 17007324 A-G Hetero INTERGENIC
SBS Chr2 34015702 G-T Hetero INTERGENIC
SBS Chr3 24801288 C-G Homo INTERGENIC
SBS Chr4 21259866 C-G Hetero INTERGENIC
SBS Chr4 25021348 G-T Hetero INTERGENIC
SBS Chr4 29205473 A-T Hetero INTRON
SBS Chr4 31095156 C-T Hetero INTERGENIC
SBS Chr4 31095157 G-T Hetero INTERGENIC
SBS Chr4 32633544 A-T Hetero INTERGENIC
SBS Chr5 2307395 G-A Homo INTERGENIC
SBS Chr6 15279989 G-A Homo INTERGENIC
SBS Chr6 27905475 T-C Hetero INTERGENIC
SBS Chr6 30756234 A-T Hetero INTRON
SBS Chr7 29041775 G-C Hetero INTERGENIC
SBS Chr8 25483848 C-G Homo NON_SYNONYMOUS_CODING OsKitaake08g200300
SBS Chr8 25496196 A-C Homo INTERGENIC
SBS Chr10 2182936 A-G Hetero INTERGENIC
SBS Chr10 4903978 A-C Hetero INTERGENIC
SBS Chr10 5151602 G-A Hetero INTERGENIC
SBS Chr10 14033226 C-A Homo INTRON
SBS Chr10 17760838 C-A Homo INTERGENIC
SBS Chr10 17760839 G-A Homo INTERGENIC
SBS Chr10 23561820 G-T Hetero INTRON
SBS Chr11 8653701 A-T Hetero INTERGENIC
SBS Chr11 8805652 G-C Hetero INTERGENIC
SBS Chr11 11683889 A-G Hetero INTERGENIC
SBS Chr11 13261032 G-A Hetero INTERGENIC
SBS Chr11 14515063 G-T Hetero INTRON
SBS Chr12 3032173 T-A Homo SPLICE_SITE_REGION
SBS Chr12 5014071 G-A Homo INTERGENIC
SBS Chr12 11034101 T-A Homo INTERGENIC
SBS Chr12 17301933 T-G Hetero INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 345605 345615 10
Deletion Chr1 875321 875324 3
Deletion Chr6 10468903 10468905 2
Deletion Chr2 20550466 20550788 322
Deletion Chr2 22121248 22121256 8
Deletion Chr5 22234552 22234555 3
Deletion Chr5 22641001 22712000 70999 10
Deletion Chr11 23007632 23007633 1
Deletion Chr12 24108343 24108349 6
Deletion Chr4 24391839 24391935 96 OsKitaake04g158400
Deletion Chr8 27226499 27226500 1
Deletion Chr2 27363508 27363516 8 OsKitaake02g274900
Deletion Chr6 30663567 30663570 3 OsKitaake06g289500

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 29759818 29759821 2
Insertion Chr7 19460129 19460132 2

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 28960613 Chr1 30478260

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14427	T-A	Homo	INTERGENIC
SBS	Chr1	14428	C-A	Homo	INTERGENIC
SBS	Chr1	14985726	C-T	Hetero	INTERGENIC
SBS	Chr1	28589817	A-G	Hetero	INTRON
SBS	Chr1	28794764	A-G	Hetero	INTERGENIC
SBS	Chr1	28794765	A-T	Hetero	INTERGENIC
SBS	Chr1	28794766	A-T	Hetero	INTERGENIC
SBS	Chr1	37744710	A-G	Homo	INTERGENIC
SBS	Chr1	39537003	G-T	Hetero	INTERGENIC
SBS	Chr2	6594451	T-C	Hetero	INTERGENIC
SBS	Chr2	13321142	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g147700
SBS	Chr2	14572605	G-A	Hetero	INTERGENIC
SBS	Chr2	17007324	A-G	Hetero	INTERGENIC
SBS	Chr2	34015702	G-T	Hetero	INTERGENIC
SBS	Chr3	24801288	C-G	Homo	INTERGENIC
SBS	Chr4	21259866	C-G	Hetero	INTERGENIC
SBS	Chr4	25021348	G-T	Hetero	INTERGENIC
SBS	Chr4	29205473	A-T	Hetero	INTRON
SBS	Chr4	31095156	C-T	Hetero	INTERGENIC
SBS	Chr4	31095157	G-T	Hetero	INTERGENIC
SBS	Chr4	32633544	A-T	Hetero	INTERGENIC
SBS	Chr5	2307395	G-A	Homo	INTERGENIC
SBS	Chr6	15279989	G-A	Homo	INTERGENIC
SBS	Chr6	27905475	T-C	Hetero	INTERGENIC
SBS	Chr6	30756234	A-T	Hetero	INTRON
SBS	Chr7	29041775	G-C	Hetero	INTERGENIC
SBS	Chr8	25483848	C-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake08g200300
SBS	Chr8	25496196	A-C	Homo	INTERGENIC
SBS	Chr10	2182936	A-G	Hetero	INTERGENIC
SBS	Chr10	4903978	A-C	Hetero	INTERGENIC
SBS	Chr10	5151602	G-A	Hetero	INTERGENIC
SBS	Chr10	14033226	C-A	Homo	INTRON
SBS	Chr10	17760838	C-A	Homo	INTERGENIC
SBS	Chr10	17760839	G-A	Homo	INTERGENIC
SBS	Chr10	23561820	G-T	Hetero	INTRON
SBS	Chr11	8653701	A-T	Hetero	INTERGENIC
SBS	Chr11	8805652	G-C	Hetero	INTERGENIC
SBS	Chr11	11683889	A-G	Hetero	INTERGENIC
SBS	Chr11	13261032	G-A	Hetero	INTERGENIC
SBS	Chr11	14515063	G-T	Hetero	INTRON
SBS	Chr12	3032173	T-A	Homo	SPLICE_SITE_REGION
SBS	Chr12	5014071	G-A	Homo	INTERGENIC
SBS	Chr12	11034101	T-A	Homo	INTERGENIC
SBS	Chr12	17301933	T-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	345605	345615	10
Deletion	Chr1	875321	875324	3
Deletion	Chr6	10468903	10468905	2
Deletion	Chr2	20550466	20550788	322
Deletion	Chr2	22121248	22121256	8
Deletion	Chr5	22234552	22234555	3
Deletion	Chr5	22641001	22712000	70999	10
Deletion	Chr11	23007632	23007633	1
Deletion	Chr12	24108343	24108349	6
Deletion	Chr4	24391839	24391935	96	OsKitaake04g158400
Deletion	Chr8	27226499	27226500	1
Deletion	Chr2	27363508	27363516	8	OsKitaake02g274900
Deletion	Chr6	30663567	30663570	3	OsKitaake06g289500

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	28960613	Chr1	30478260

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes