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Mutant Information

Mutant Name	FN801-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN801-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000014 (Panicle Weight) = Normal (Between 75% and 125%) TO:0000207 (Plant height) = Normal (Between 75% and 125%) TO:0000445 (Seed Number) = Normal (Between 75% and 125%) TO:0000639 (Seed fertility) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 29

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 26105272 C-T Homo INTERGENIC
SBS Chr1 26105273 C-T Homo INTERGENIC
SBS Chr1 38890695 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g417200
SBS Chr1 41949244 C-T Hetero INTRON
SBS Chr2 24321788 C-A Hetero INTRON
SBS Chr2 31672715 G-A Hetero INTERGENIC
SBS Chr3 19520756 T-G Homo INTERGENIC
SBS Chr4 7886722 A-G Homo INTERGENIC
SBS Chr4 21221372 G-A Homo INTERGENIC
SBS Chr4 21221373 C-A Homo INTERGENIC
SBS Chr5 25384237 C-T Hetero INTERGENIC
SBS Chr6 13904810 A-T Homo INTERGENIC
SBS Chr7 6065939 C-G Hetero INTERGENIC
SBS Chr7 11961793 G-T Hetero INTERGENIC
SBS Chr7 19639754 G-A Homo INTERGENIC
SBS Chr8 13974979 G-A Homo INTRON
SBS Chr8 17049761 G-T Homo INTERGENIC
SBS Chr8 24951477 A-T Hetero INTERGENIC
SBS Chr9 7638983 G-T Hetero INTERGENIC
SBS Chr10 2108969 A-C Hetero INTERGENIC
SBS Chr10 23486712 G-C Homo INTERGENIC
SBS Chr10 23944362 C-T Homo NON_SYNONYMOUS_CODING OsKitaake10g207200
SBS Chr10 23944363 A-T Homo SYNONYMOUS_CODING
SBS Chr11 19277939 G-A Hetero INTRON
SBS Chr11 22210966 T-A Hetero UTR_5_PRIME
SBS Chr11 22210967 C-A Hetero UTR_5_PRIME
SBS Chr11 22537420 G-T Hetero INTERGENIC
SBS Chr12 1088117 A-G Hetero INTERGENIC
SBS Chr12 2795270 G-A Hetero INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 2452001 2518000 65999 10
Deletion Chr8 4204088 4204089 1
Deletion Chr4 6182360 6182369 9
Deletion Chr5 7046111 7046121 10
Deletion Chr4 13462385 13462395 10
Deletion Chr9 19157657 19157658 1
Deletion Chr9 20878058 20878076 18
Deletion Chr1 20959779 20959782 3
Deletion Chr7 22766356 22766361 5
Deletion Chr6 23589752 23589753 1
Deletion Chr2 24754508 24754512 4
Deletion Chr3 26444111 26444121 10
Deletion Chr3 26752001 26832000 79999
Deletion Chr6 28249120 28249121 1
Deletion Chr11 28971019 28971028 9 OsKitaake11g237000

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 8143087 8143090 2
Insertion Chr4 1905776 1905779 2
Insertion Chr4 12203456 12203459 2
Insertion Chr7 11124800 11124804 3
Insertion Chr10 2236111 2236114 2
Insertion Chr12 12248092 12248095 2

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 25286162 25378514

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 16700595 Chr5 28355589 OsKitaake05g263500
Translocation Chr7 16702673 Chr5 28355589 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	26105272	C-T	Homo	INTERGENIC
SBS	Chr1	26105273	C-T	Homo	INTERGENIC
SBS	Chr1	38890695	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g417200
SBS	Chr1	41949244	C-T	Hetero	INTRON
SBS	Chr2	24321788	C-A	Hetero	INTRON
SBS	Chr2	31672715	G-A	Hetero	INTERGENIC
SBS	Chr3	19520756	T-G	Homo	INTERGENIC
SBS	Chr4	7886722	A-G	Homo	INTERGENIC
SBS	Chr4	21221372	G-A	Homo	INTERGENIC
SBS	Chr4	21221373	C-A	Homo	INTERGENIC
SBS	Chr5	25384237	C-T	Hetero	INTERGENIC
SBS	Chr6	13904810	A-T	Homo	INTERGENIC
SBS	Chr7	6065939	C-G	Hetero	INTERGENIC
SBS	Chr7	11961793	G-T	Hetero	INTERGENIC
SBS	Chr7	19639754	G-A	Homo	INTERGENIC
SBS	Chr8	13974979	G-A	Homo	INTRON
SBS	Chr8	17049761	G-T	Homo	INTERGENIC
SBS	Chr8	24951477	A-T	Hetero	INTERGENIC
SBS	Chr9	7638983	G-T	Hetero	INTERGENIC
SBS	Chr10	2108969	A-C	Hetero	INTERGENIC
SBS	Chr10	23486712	G-C	Homo	INTERGENIC
SBS	Chr10	23944362	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake10g207200
SBS	Chr10	23944363	A-T	Homo	SYNONYMOUS_CODING
SBS	Chr11	19277939	G-A	Hetero	INTRON
SBS	Chr11	22210966	T-A	Hetero	UTR_5_PRIME
SBS	Chr11	22210967	C-A	Hetero	UTR_5_PRIME
SBS	Chr11	22537420	G-T	Hetero	INTERGENIC
SBS	Chr12	1088117	A-G	Hetero	INTERGENIC
SBS	Chr12	2795270	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	2452001	2518000	65999	10
Deletion	Chr8	4204088	4204089	1
Deletion	Chr4	6182360	6182369	9
Deletion	Chr5	7046111	7046121	10
Deletion	Chr4	13462385	13462395	10
Deletion	Chr9	19157657	19157658	1
Deletion	Chr9	20878058	20878076	18
Deletion	Chr1	20959779	20959782	3
Deletion	Chr7	22766356	22766361	5
Deletion	Chr6	23589752	23589753	1
Deletion	Chr2	24754508	24754512	4
Deletion	Chr3	26444111	26444121	10
Deletion	Chr3	26752001	26832000	79999
Deletion	Chr6	28249120	28249121	1
Deletion	Chr11	28971019	28971028	9	OsKitaake11g237000

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	25286162	25378514

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes