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Mutant Information

Mutant Name	FN814-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN814-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Low (Between 25% and 75%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 26

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 7772997 G-A Hetero INTERGENIC
SBS Chr2 4475751 C-T Hetero INTERGENIC
SBS Chr2 12464043 T-G Homo INTERGENIC
SBS Chr2 12486093 A-T Hetero INTERGENIC
SBS Chr3 17087446 C-T Homo INTERGENIC
SBS Chr3 33170104 G-A Hetero INTRON
SBS Chr4 2959654 G-T Hetero INTERGENIC
SBS Chr4 16096220 G-T Hetero INTERGENIC
SBS Chr4 24442897 T-A Hetero INTRON
SBS Chr5 19476305 A-T Homo INTERGENIC
SBS Chr5 26220352 G-A Homo INTERGENIC
SBS Chr5 26220353 C-T Homo INTERGENIC
SBS Chr7 8528851 C-T Homo INTERGENIC
SBS Chr7 21015361 C-T Hetero INTERGENIC
SBS Chr7 24349010 G-A Hetero INTERGENIC
SBS Chr9 6724041 C-G Hetero INTERGENIC
SBS Chr10 729004 C-T Hetero INTERGENIC
SBS Chr10 9663339 A-C Homo NON_SYNONYMOUS_CODING OsKitaake10g056500
SBS Chr12 3225509 A-G Hetero INTERGENIC
SBS Chr12 4516454 G-A Hetero INTERGENIC
SBS Chr12 6794868 G-A Hetero INTERGENIC
SBS Chr12 9265675 C-A Hetero UTR_3_PRIME
SBS Chr12 18623031 G-A Hetero INTERGENIC
SBS Chr12 18623033 G-A Hetero INTERGENIC
SBS Chr12 21908109 C-T Hetero INTERGENIC
SBS Chr12 25596328 T-G Homo INTERGENIC

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 3753310 3753312 2
Deletion Chr11 7987978 7987979 1
Deletion Chr11 11745917 11745920 3
Deletion Chr7 14125425 14125440 15
Deletion Chr4 14166406 14166410 4
Deletion Chr11 14447485 14447486 1
Deletion Chr11 16505333 16505334 1
Deletion Chr8 17264253 17264339 86
Deletion Chr4 18721507 18721508 1
Deletion Chr8 27279056 27279058 2
Deletion Chr1 31753546 31753551 5

Insertions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 12271458 12271461 2
Insertion Chr2 21174064 21174067 2
Insertion Chr3 3729885 3729888 2
Insertion Chr3 23419542 23419545 2
Insertion Chr8 4853022 4853025 2
Insertion Chr9 21243820 21243823 2
Insertion Chr10 23114439 23114442 2
Insertion Chr11 10694042 10694045 2

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 8454057 8465581
Inversion Chr7 8465584 8466832
Inversion Chr12 26250732 26375386
Inversion Chr12 26250737 26375400
Inversion Chr3 30221201 30275331 2

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 17675251 Chr3 28812608 OsKitaake03g298600
Translocation Chr9 17675271 Chr3 28811712 OsKitaake03g298600
Translocation Chr5 19268244 Chr3 30245840 OsKitaake03g317200
Translocation Chr5 19268248 Chr3 30266721 OsKitaake03g317400

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7772997	G-A	Hetero	INTERGENIC
SBS	Chr2	4475751	C-T	Hetero	INTERGENIC
SBS	Chr2	12464043	T-G	Homo	INTERGENIC
SBS	Chr2	12486093	A-T	Hetero	INTERGENIC
SBS	Chr3	17087446	C-T	Homo	INTERGENIC
SBS	Chr3	33170104	G-A	Hetero	INTRON
SBS	Chr4	2959654	G-T	Hetero	INTERGENIC
SBS	Chr4	16096220	G-T	Hetero	INTERGENIC
SBS	Chr4	24442897	T-A	Hetero	INTRON
SBS	Chr5	19476305	A-T	Homo	INTERGENIC
SBS	Chr5	26220352	G-A	Homo	INTERGENIC
SBS	Chr5	26220353	C-T	Homo	INTERGENIC
SBS	Chr7	8528851	C-T	Homo	INTERGENIC
SBS	Chr7	21015361	C-T	Hetero	INTERGENIC
SBS	Chr7	24349010	G-A	Hetero	INTERGENIC
SBS	Chr9	6724041	C-G	Hetero	INTERGENIC
SBS	Chr10	729004	C-T	Hetero	INTERGENIC
SBS	Chr10	9663339	A-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake10g056500
SBS	Chr12	3225509	A-G	Hetero	INTERGENIC
SBS	Chr12	4516454	G-A	Hetero	INTERGENIC
SBS	Chr12	6794868	G-A	Hetero	INTERGENIC
SBS	Chr12	9265675	C-A	Hetero	UTR_3_PRIME
SBS	Chr12	18623031	G-A	Hetero	INTERGENIC
SBS	Chr12	18623033	G-A	Hetero	INTERGENIC
SBS	Chr12	21908109	C-T	Hetero	INTERGENIC
SBS	Chr12	25596328	T-G	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	3753310	3753312	2
Deletion	Chr11	7987978	7987979	1
Deletion	Chr11	11745917	11745920	3
Deletion	Chr7	14125425	14125440	15
Deletion	Chr4	14166406	14166410	4
Deletion	Chr11	14447485	14447486	1
Deletion	Chr11	16505333	16505334	1
Deletion	Chr8	17264253	17264339	86
Deletion	Chr4	18721507	18721508	1
Deletion	Chr8	27279056	27279058	2
Deletion	Chr1	31753546	31753551	5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	8454057	8465581
Inversion	Chr7	8465584	8466832
Inversion	Chr12	26250732	26375386
Inversion	Chr12	26250737	26375400
Inversion	Chr3	30221201	30275331	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes