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Mutant Information

Mutant Name	FN817-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN817-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000014 (Panicle Weight) = Low (Between 25% and 74%) TO:0000207 (Plant height) = Normal (Between 75% and 125%) TO:0000445 (Seed Number) = Normal (Between 75% and 125%) TO:0000639 (Seed fertility) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 22

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3675076 C-T Hetero INTERGENIC
SBS Chr1 17585908 C-T Homo INTERGENIC
SBS Chr1 23891270 G-A Homo INTERGENIC
SBS Chr1 30785543 C-A Homo INTERGENIC
SBS Chr1 36496207 A-T Hetero INTRON
SBS Chr2 10578641 T-C Hetero INTERGENIC
SBS Chr2 10580008 A-G Hetero INTERGENIC
SBS Chr2 11650365 T-A Hetero INTERGENIC
SBS Chr2 29095648 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake02g292800
SBS Chr3 21357767 G-A Homo INTERGENIC
SBS Chr3 28302467 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g292700
SBS Chr4 14375813 G-A Homo INTERGENIC
SBS Chr4 18145551 A-T Homo INTERGENIC
SBS Chr4 18145552 A-T Homo INTERGENIC
SBS Chr4 18145553 G-T Homo INTERGENIC
SBS Chr5 11734309 G-A Hetero INTERGENIC
SBS Chr6 16048273 C-A Hetero INTERGENIC
SBS Chr6 16048274 T-A Hetero INTERGENIC
SBS Chr8 1111805 T-C Homo INTERGENIC
SBS Chr8 9742816 C-T Hetero INTERGENIC
SBS Chr11 8503387 C-T Hetero INTERGENIC
SBS Chr11 22981149 A-C Hetero INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 1923745 1923753 8
Deletion Chr12 3461008 3461009 1
Deletion Chr8 3958468 3958469 1
Deletion Chr5 4481478 4481479 1 OsKitaake05g052000
Deletion Chr12 7273118 7273120 2
Deletion Chr1 10018646 10018649 3
Deletion Chr4 16277168 16277178 10
Deletion Chr9 17937531 17937533 2
Deletion Chr8 18432208 18432209 1
Deletion Chr6 22220566 22220570 4
Deletion Chr2 23639242 23639246 4 OsKitaake02g232300
Deletion Chr8 27680001 27706000 25999 3
Deletion Chr6 27785809 27785810 1
Deletion Chr4 29162436 29162438 2
Deletion Chr4 33762464 33762478 14 OsKitaake04g280500

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr8 27257524 27257528 3
Insertion Chr2 13756014 13756016 1

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 14667701 14902089 OsKitaake09g102500
Inversion Chr9 14667732 14902100 OsKitaake09g102500
Inversion Chr4 21539716 21636098 2
Inversion Chr4 21539726 21636094 2

Translocations: 6

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 1022677 Chr4 17640267 OsKitaake04g088300
Translocation Chr12 1040003 Chr4 17741520 OsKitaake04g088900
Translocation Chr9 9304250 Chr4 12852176 2
Translocation Chr9 9304465 Chr4 12852172 2
Translocation Chr4 36105255 Chr3 13185574 OsKitaake04g311000
Translocation Chr4 36105257 Chr3 13200459 OsKitaake04g311000

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3675076	C-T	Hetero	INTERGENIC
SBS	Chr1	17585908	C-T	Homo	INTERGENIC
SBS	Chr1	23891270	G-A	Homo	INTERGENIC
SBS	Chr1	30785543	C-A	Homo	INTERGENIC
SBS	Chr1	36496207	A-T	Hetero	INTRON
SBS	Chr2	10578641	T-C	Hetero	INTERGENIC
SBS	Chr2	10580008	A-G	Hetero	INTERGENIC
SBS	Chr2	11650365	T-A	Hetero	INTERGENIC
SBS	Chr2	29095648	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g292800
SBS	Chr3	21357767	G-A	Homo	INTERGENIC
SBS	Chr3	28302467	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g292700
SBS	Chr4	14375813	G-A	Homo	INTERGENIC
SBS	Chr4	18145551	A-T	Homo	INTERGENIC
SBS	Chr4	18145552	A-T	Homo	INTERGENIC
SBS	Chr4	18145553	G-T	Homo	INTERGENIC
SBS	Chr5	11734309	G-A	Hetero	INTERGENIC
SBS	Chr6	16048273	C-A	Hetero	INTERGENIC
SBS	Chr6	16048274	T-A	Hetero	INTERGENIC
SBS	Chr8	1111805	T-C	Homo	INTERGENIC
SBS	Chr8	9742816	C-T	Hetero	INTERGENIC
SBS	Chr11	8503387	C-T	Hetero	INTERGENIC
SBS	Chr11	22981149	A-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	1923745	1923753	8
Deletion	Chr12	3461008	3461009	1
Deletion	Chr8	3958468	3958469	1
Deletion	Chr5	4481478	4481479	1	OsKitaake05g052000
Deletion	Chr12	7273118	7273120	2
Deletion	Chr1	10018646	10018649	3
Deletion	Chr4	16277168	16277178	10
Deletion	Chr9	17937531	17937533	2
Deletion	Chr8	18432208	18432209	1
Deletion	Chr6	22220566	22220570	4
Deletion	Chr2	23639242	23639246	4	OsKitaake02g232300
Deletion	Chr8	27680001	27706000	25999	3
Deletion	Chr6	27785809	27785810	1
Deletion	Chr4	29162436	29162438	2
Deletion	Chr4	33762464	33762478	14	OsKitaake04g280500

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	14667701	14902089	OsKitaake09g102500
Inversion	Chr9	14667732	14902100	OsKitaake09g102500
Inversion	Chr4	21539716	21636098	2
Inversion	Chr4	21539726	21636094	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes