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Mutant Information

Mutant Name	FN820-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN820-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000014 (Panicle Weight) = Low (Between 25% and 74%) TO:0000207 (Plant height) = Normal (Between 75% and 125%) TO:0000445 (Seed Number) = Low (Between 25% and 74%) TO:0000639 (Seed fertility) = Low (Between 25% and 74%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 23

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr2 29618759 G-T Hetero INTERGENIC
SBS Chr3 8864972 C-G Homo INTRON
SBS Chr3 22471950 G-A Hetero INTERGENIC
SBS Chr3 23682165 T-G Homo INTERGENIC
SBS Chr3 26051625 C-G Homo UTR_5_PRIME
SBS Chr3 27277348 G-A Homo INTERGENIC
SBS Chr4 935029 A-C Hetero INTERGENIC
SBS Chr4 1393851 G-A Hetero INTERGENIC
SBS Chr4 19107001 A-G Homo INTERGENIC
SBS Chr4 19107002 G-A Homo INTERGENIC
SBS Chr4 21445087 T-A Hetero INTERGENIC
SBS Chr5 14498101 G-A Hetero UTR_3_PRIME
SBS Chr6 7628514 A-G Hetero INTERGENIC
SBS Chr7 6128213 A-G Hetero INTERGENIC
SBS Chr7 14377216 A-T Hetero INTERGENIC
SBS Chr8 29027204 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake08g251600
SBS Chr9 8851245 G-C Homo INTERGENIC
SBS Chr10 4118589 A-G Hetero SYNONYMOUS_CODING
SBS Chr10 4403712 C-T Hetero INTERGENIC
SBS Chr10 7066751 A-T Hetero INTERGENIC
SBS Chr10 17428643 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake10g118700
SBS Chr12 11615494 C-T Homo INTERGENIC
SBS Chr12 23533615 C-T Homo INTRON

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 1921924 1921925 1
Deletion Chr5 4369423 4369427 4
Deletion Chr2 5948989 5948991 2
Deletion Chr6 11724290 11724291 1
Deletion Chr12 15218783 15218786 3
Deletion Chr1 17497060 17497061 1
Deletion Chr2 21870677 21870680 3
Deletion Chr5 26457199 26457221 22
Deletion Chr3 28725229 28725241 12
Deletion Chr3 30394748 30394753 5
Deletion Chr3 31425557 31425561 4 OsKitaake03g331400
Deletion Chr1 39481646 39481647 1
Deletion Chr1 40622077 40622082 5

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 15229229 15229232 2
Insertion Chr12 6580688 6580692 3

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 17604395 18393714 2
Inversion Chr8 17699754 18393714 OsKitaake08g136900

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr2	29618759	G-T	Hetero	INTERGENIC
SBS	Chr3	8864972	C-G	Homo	INTRON
SBS	Chr3	22471950	G-A	Hetero	INTERGENIC
SBS	Chr3	23682165	T-G	Homo	INTERGENIC
SBS	Chr3	26051625	C-G	Homo	UTR_5_PRIME
SBS	Chr3	27277348	G-A	Homo	INTERGENIC
SBS	Chr4	935029	A-C	Hetero	INTERGENIC
SBS	Chr4	1393851	G-A	Hetero	INTERGENIC
SBS	Chr4	19107001	A-G	Homo	INTERGENIC
SBS	Chr4	19107002	G-A	Homo	INTERGENIC
SBS	Chr4	21445087	T-A	Hetero	INTERGENIC
SBS	Chr5	14498101	G-A	Hetero	UTR_3_PRIME
SBS	Chr6	7628514	A-G	Hetero	INTERGENIC
SBS	Chr7	6128213	A-G	Hetero	INTERGENIC
SBS	Chr7	14377216	A-T	Hetero	INTERGENIC
SBS	Chr8	29027204	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g251600
SBS	Chr9	8851245	G-C	Homo	INTERGENIC
SBS	Chr10	4118589	A-G	Hetero	SYNONYMOUS_CODING
SBS	Chr10	4403712	C-T	Hetero	INTERGENIC
SBS	Chr10	7066751	A-T	Hetero	INTERGENIC
SBS	Chr10	17428643	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g118700
SBS	Chr12	11615494	C-T	Homo	INTERGENIC
SBS	Chr12	23533615	C-T	Homo	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	1921924	1921925	1
Deletion	Chr5	4369423	4369427	4
Deletion	Chr2	5948989	5948991	2
Deletion	Chr6	11724290	11724291	1
Deletion	Chr12	15218783	15218786	3
Deletion	Chr1	17497060	17497061	1
Deletion	Chr2	21870677	21870680	3
Deletion	Chr5	26457199	26457221	22
Deletion	Chr3	28725229	28725241	12
Deletion	Chr3	30394748	30394753	5
Deletion	Chr3	31425557	31425561	4	OsKitaake03g331400
Deletion	Chr1	39481646	39481647	1
Deletion	Chr1	40622077	40622082	5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	17604395	18393714	2
Inversion	Chr8	17699754	18393714	OsKitaake08g136900

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes