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Mutant Information

Mutant Name	FN835-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN835-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Low (Between 25% and 75%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 43

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 9939421 C-T Hetero INTERGENIC
SBS Chr1 10437683 C-T Hetero INTRON
SBS Chr1 14262458 C-T Homo INTERGENIC
SBS Chr1 20768254 A-T Hetero INTERGENIC
SBS Chr1 25727617 C-A Homo INTERGENIC
SBS Chr1 29689083 G-C Hetero INTRON
SBS Chr1 31614573 C-T Hetero INTERGENIC
SBS Chr1 32278147 C-T Hetero INTERGENIC
SBS Chr2 12187876 C-T Hetero INTRON
SBS Chr2 16818411 G-A Homo INTERGENIC
SBS Chr3 18182347 A-G Hetero INTERGENIC
SBS Chr3 21942213 C-G Hetero INTERGENIC
SBS Chr3 25065704 C-T Homo INTERGENIC
SBS Chr3 35905174 G-A Hetero INTERGENIC
SBS Chr4 9884730 G-A Hetero INTERGENIC
SBS Chr4 11507442 A-G Hetero INTERGENIC
SBS Chr4 20663298 G-A Hetero INTERGENIC
SBS Chr5 1466838 T-C Hetero INTERGENIC
SBS Chr5 11631490 G-T Hetero INTERGENIC
SBS Chr5 16425808 G-A Hetero INTERGENIC
SBS Chr5 19196587 G-A Hetero INTERGENIC
SBS Chr6 3173894 C-T Hetero INTERGENIC
SBS Chr6 3708319 T-C Homo INTERGENIC
SBS Chr6 27474125 A-T Hetero INTERGENIC
SBS Chr7 4577719 A-T Hetero INTERGENIC
SBS Chr7 8024737 G-C Hetero INTERGENIC
SBS Chr7 16912601 C-T Hetero INTERGENIC
SBS Chr8 6183808 C-T Hetero INTERGENIC
SBS Chr8 12266588 G-A Hetero INTERGENIC
SBS Chr8 18813141 A-G Homo INTERGENIC
SBS Chr8 28087415 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake08g236100
SBS Chr9 4604054 C-G Hetero INTERGENIC
SBS Chr9 5801663 G-A Homo INTERGENIC
SBS Chr9 5899762 T-G Homo INTRON
SBS Chr9 19500155 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake09g159100
SBS Chr9 22771749 C-T Hetero INTERGENIC
SBS Chr10 3264216 G-A Hetero INTERGENIC
SBS Chr10 8495899 T-G Homo INTERGENIC
SBS Chr10 17525732 G-T Homo UTR_5_PRIME
SBS Chr11 12712058 C-T Hetero INTERGENIC
SBS Chr11 15098945 T-A Homo INTERGENIC
SBS Chr11 18914075 C-T Hetero INTERGENIC
SBS Chr11 26522805 A-G Hetero INTERGENIC

Deletions: 18

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 1171556 1171559 3
Deletion Chr6 2681310 2681314 4
Deletion Chr4 3876806 3876807 1
Deletion Chr9 7102001 7860000 757999 30
Deletion Chr7 9458001 9641000 182999 9
Deletion Chr9 9476001 9534000 57999 5
Deletion Chr4 9744805 9744808 3
Deletion Chr9 10040572 10040575 3
Deletion Chr9 10727017 10727020 3
Deletion Chr9 11570723 11570729 6 OsKitaake09g072500
Deletion Chr9 11886001 11935000 48999 2
Deletion Chr11 13423113 13423118 5
Deletion Chr8 13876831 13876834 3
Deletion Chr3 14284633 14284637 4
Deletion Chr11 17383626 17383636 10
Deletion Chr3 17995936 17995939 3
Deletion Chr4 26558703 26558707 4
Deletion Chr1 27380986 27381002 16

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 5376534 5376537 2
Insertion Chr7 28157969 28157971 1
Insertion Chr7 28702050 28702054 3
Insertion Chr8 23603230 23603232 1

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 7857081 7946418
Inversion Chr9 17880078 18019990 2
Inversion Chr9 18019997 18053599 2
Inversion Chr3 22027337 22147986

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 7102195 Chr3 22027342

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	9939421	C-T	Hetero	INTERGENIC
SBS	Chr1	10437683	C-T	Hetero	INTRON
SBS	Chr1	14262458	C-T	Homo	INTERGENIC
SBS	Chr1	20768254	A-T	Hetero	INTERGENIC
SBS	Chr1	25727617	C-A	Homo	INTERGENIC
SBS	Chr1	29689083	G-C	Hetero	INTRON
SBS	Chr1	31614573	C-T	Hetero	INTERGENIC
SBS	Chr1	32278147	C-T	Hetero	INTERGENIC
SBS	Chr2	12187876	C-T	Hetero	INTRON
SBS	Chr2	16818411	G-A	Homo	INTERGENIC
SBS	Chr3	18182347	A-G	Hetero	INTERGENIC
SBS	Chr3	21942213	C-G	Hetero	INTERGENIC
SBS	Chr3	25065704	C-T	Homo	INTERGENIC
SBS	Chr3	35905174	G-A	Hetero	INTERGENIC
SBS	Chr4	9884730	G-A	Hetero	INTERGENIC
SBS	Chr4	11507442	A-G	Hetero	INTERGENIC
SBS	Chr4	20663298	G-A	Hetero	INTERGENIC
SBS	Chr5	1466838	T-C	Hetero	INTERGENIC
SBS	Chr5	11631490	G-T	Hetero	INTERGENIC
SBS	Chr5	16425808	G-A	Hetero	INTERGENIC
SBS	Chr5	19196587	G-A	Hetero	INTERGENIC
SBS	Chr6	3173894	C-T	Hetero	INTERGENIC
SBS	Chr6	3708319	T-C	Homo	INTERGENIC
SBS	Chr6	27474125	A-T	Hetero	INTERGENIC
SBS	Chr7	4577719	A-T	Hetero	INTERGENIC
SBS	Chr7	8024737	G-C	Hetero	INTERGENIC
SBS	Chr7	16912601	C-T	Hetero	INTERGENIC
SBS	Chr8	6183808	C-T	Hetero	INTERGENIC
SBS	Chr8	12266588	G-A	Hetero	INTERGENIC
SBS	Chr8	18813141	A-G	Homo	INTERGENIC
SBS	Chr8	28087415	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g236100
SBS	Chr9	4604054	C-G	Hetero	INTERGENIC
SBS	Chr9	5801663	G-A	Homo	INTERGENIC
SBS	Chr9	5899762	T-G	Homo	INTRON
SBS	Chr9	19500155	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g159100
SBS	Chr9	22771749	C-T	Hetero	INTERGENIC
SBS	Chr10	3264216	G-A	Hetero	INTERGENIC
SBS	Chr10	8495899	T-G	Homo	INTERGENIC
SBS	Chr10	17525732	G-T	Homo	UTR_5_PRIME
SBS	Chr11	12712058	C-T	Hetero	INTERGENIC
SBS	Chr11	15098945	T-A	Homo	INTERGENIC
SBS	Chr11	18914075	C-T	Hetero	INTERGENIC
SBS	Chr11	26522805	A-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	1171556	1171559	3
Deletion	Chr6	2681310	2681314	4
Deletion	Chr4	3876806	3876807	1
Deletion	Chr9	7102001	7860000	757999	30
Deletion	Chr7	9458001	9641000	182999	9
Deletion	Chr9	9476001	9534000	57999	5
Deletion	Chr4	9744805	9744808	3
Deletion	Chr9	10040572	10040575	3
Deletion	Chr9	10727017	10727020	3
Deletion	Chr9	11570723	11570729	6	OsKitaake09g072500
Deletion	Chr9	11886001	11935000	48999	2
Deletion	Chr11	13423113	13423118	5
Deletion	Chr8	13876831	13876834	3
Deletion	Chr3	14284633	14284637	4
Deletion	Chr11	17383626	17383636	10
Deletion	Chr3	17995936	17995939	3
Deletion	Chr4	26558703	26558707	4
Deletion	Chr1	27380986	27381002	16

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	7857081	7946418
Inversion	Chr9	17880078	18019990	2
Inversion	Chr9	18019997	18053599	2
Inversion	Chr3	22027337	22147986

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes