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Mutant Information

Mutant Name	FN837-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN837-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000014 (Panicle Weight) = Normal (Between 75% and 125%) TO:0000207 (Plant height) = Normal (Between 75% and 125%) TO:0000445 (Seed Number) = Normal (Between 75% and 125%) TO:0000639 (Seed fertility) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 34

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 7077364 G-A Hetero INTERGENIC
SBS Chr1 18378517 T-G Hetero NON_SYNONYMOUS_CODING OsKitaake01g184500
SBS Chr1 24202390 C-T Hetero SYNONYMOUS_CODING
SBS Chr1 29369413 A-T Homo INTERGENIC
SBS Chr1 37582145 G-A Homo INTERGENIC
SBS Chr1 37582146 A-T Homo INTERGENIC
SBS Chr1 41728547 T-A Homo INTERGENIC
SBS Chr2 28169626 A-G Hetero INTERGENIC
SBS Chr3 14905479 G-A Hetero INTRON
SBS Chr3 26158488 G-A Homo INTERGENIC
SBS Chr3 31072567 T-C Hetero INTRON
SBS Chr4 11479140 C-T Homo INTERGENIC
SBS Chr4 13066209 C-T Homo INTERGENIC
SBS Chr4 26620824 G-A Homo INTERGENIC
SBS Chr5 11967047 C-T Hetero INTERGENIC
SBS Chr5 29308105 G-A Homo INTERGENIC
SBS Chr6 4269162 C-A Homo INTERGENIC
SBS Chr6 18459067 G-T Hetero INTERGENIC
SBS Chr7 14396634 C-T Hetero INTERGENIC
SBS Chr7 17053376 C-T Hetero INTERGENIC
SBS Chr7 19898536 C-T Hetero UTR_3_PRIME
SBS Chr8 8877607 G-T Homo INTERGENIC
SBS Chr9 6565948 G-A Homo INTERGENIC
SBS Chr9 8671226 C-T Hetero INTERGENIC
SBS Chr9 11418824 A-G Homo INTERGENIC
SBS Chr10 220882 G-A Homo INTERGENIC
SBS Chr10 2141173 T-G Homo INTERGENIC
SBS Chr10 21024050 G-T Hetero INTERGENIC
SBS Chr11 3426774 G-A Hetero INTERGENIC
SBS Chr11 13496951 C-T Hetero INTERGENIC
SBS Chr11 28134034 C-T Homo INTERGENIC
SBS Chr12 8493162 G-T Homo INTERGENIC
SBS Chr12 14225185 G-A Homo INTERGENIC
SBS Chr12 19051634 G-T Homo INTERGENIC

Deletions: 18

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 784345 784351 6
Deletion Chr3 3143398 3143577 179
Deletion Chr5 4424872 4424873 1
Deletion Chr9 5696041 5696042 1
Deletion Chr5 6599818 6599820 2
Deletion Chr2 6719126 6719132 6
Deletion Chr11 8366829 8366830 1
Deletion Chr5 9155544 9155640 96
Deletion Chr11 11354001 11710000 355999 12
Deletion Chr9 16995313 16995322 9
Deletion Chr11 19305773 19305781 8
Deletion Chr5 21377325 21377326 1 OsKitaake05g173500
Deletion Chr4 22195497 22195501 4
Deletion Chr12 23939349 23939351 2
Deletion Chr12 25030661 25030664 3
Deletion Chr4 29014692 29014693 1 OsKitaake04g218800
Deletion Chr2 29664713 29664715 2
Deletion Chr1 39118114 39118115 1

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 32831753 32831756 2
Insertion Chr5 2837653 2837656 2
Insertion Chr7 26029878 26029881 2
Insertion Chr3 19007812 19007815 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 975735 1517903 OsKitaake08g018800
Inversion Chr8 975757 1517906 OsKitaake08g018800
Inversion Chr1 6926202 7398101 OsKitaake01g092408
Inversion Chr3 26206645 26898709

Translocations: 6

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 3867730 Chr1 9996774
Translocation Chr11 3868007 Chr1 23234812
Translocation Chr11 3868026 Chr1 6926207
Translocation Chr11 3914095 Chr1 7398105 OsKitaake01g092408
Translocation Chr7 23475826 Chr1 9996774 OsKitaake07g205600
Translocation Chr7 23475827 Chr1 23234539 OsKitaake07g205600

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7077364	G-A	Hetero	INTERGENIC
SBS	Chr1	18378517	T-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g184500
SBS	Chr1	24202390	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr1	29369413	A-T	Homo	INTERGENIC
SBS	Chr1	37582145	G-A	Homo	INTERGENIC
SBS	Chr1	37582146	A-T	Homo	INTERGENIC
SBS	Chr1	41728547	T-A	Homo	INTERGENIC
SBS	Chr2	28169626	A-G	Hetero	INTERGENIC
SBS	Chr3	14905479	G-A	Hetero	INTRON
SBS	Chr3	26158488	G-A	Homo	INTERGENIC
SBS	Chr3	31072567	T-C	Hetero	INTRON
SBS	Chr4	11479140	C-T	Homo	INTERGENIC
SBS	Chr4	13066209	C-T	Homo	INTERGENIC
SBS	Chr4	26620824	G-A	Homo	INTERGENIC
SBS	Chr5	11967047	C-T	Hetero	INTERGENIC
SBS	Chr5	29308105	G-A	Homo	INTERGENIC
SBS	Chr6	4269162	C-A	Homo	INTERGENIC
SBS	Chr6	18459067	G-T	Hetero	INTERGENIC
SBS	Chr7	14396634	C-T	Hetero	INTERGENIC
SBS	Chr7	17053376	C-T	Hetero	INTERGENIC
SBS	Chr7	19898536	C-T	Hetero	UTR_3_PRIME
SBS	Chr8	8877607	G-T	Homo	INTERGENIC
SBS	Chr9	6565948	G-A	Homo	INTERGENIC
SBS	Chr9	8671226	C-T	Hetero	INTERGENIC
SBS	Chr9	11418824	A-G	Homo	INTERGENIC
SBS	Chr10	220882	G-A	Homo	INTERGENIC
SBS	Chr10	2141173	T-G	Homo	INTERGENIC
SBS	Chr10	21024050	G-T	Hetero	INTERGENIC
SBS	Chr11	3426774	G-A	Hetero	INTERGENIC
SBS	Chr11	13496951	C-T	Hetero	INTERGENIC
SBS	Chr11	28134034	C-T	Homo	INTERGENIC
SBS	Chr12	8493162	G-T	Homo	INTERGENIC
SBS	Chr12	14225185	G-A	Homo	INTERGENIC
SBS	Chr12	19051634	G-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	784345	784351	6
Deletion	Chr3	3143398	3143577	179
Deletion	Chr5	4424872	4424873	1
Deletion	Chr9	5696041	5696042	1
Deletion	Chr5	6599818	6599820	2
Deletion	Chr2	6719126	6719132	6
Deletion	Chr11	8366829	8366830	1
Deletion	Chr5	9155544	9155640	96
Deletion	Chr11	11354001	11710000	355999	12
Deletion	Chr9	16995313	16995322	9
Deletion	Chr11	19305773	19305781	8
Deletion	Chr5	21377325	21377326	1	OsKitaake05g173500
Deletion	Chr4	22195497	22195501	4
Deletion	Chr12	23939349	23939351	2
Deletion	Chr12	25030661	25030664	3
Deletion	Chr4	29014692	29014693	1	OsKitaake04g218800
Deletion	Chr2	29664713	29664715	2
Deletion	Chr1	39118114	39118115	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	975735	1517903	OsKitaake08g018800
Inversion	Chr8	975757	1517906	OsKitaake08g018800
Inversion	Chr1	6926202	7398101	OsKitaake01g092408
Inversion	Chr3	26206645	26898709

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes