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Mutant Information

Mutant Name	FN874-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN874-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 39

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 10613286 A-G Hetero INTERGENIC
SBS Chr1 13418159 G-A Hetero INTERGENIC
SBS Chr1 16922193 C-T Hetero INTERGENIC
SBS Chr2 4751181 G-A Hetero INTRON
SBS Chr2 10280343 T-A Hetero INTERGENIC
SBS Chr2 11476635 C-T Hetero INTERGENIC
SBS Chr2 21180633 A-T Hetero INTERGENIC
SBS Chr2 22065997 G-A Hetero INTRON
SBS Chr2 25414689 A-C Hetero INTERGENIC
SBS Chr2 31229663 C-A Hetero INTERGENIC
SBS Chr2 31233670 A-C Hetero INTERGENIC
SBS Chr2 31618758 T-G Homo INTERGENIC
SBS Chr3 1928613 C-A Homo NON_SYNONYMOUS_CODING OsKitaake03g027600
SBS Chr4 1606536 G-A Homo INTERGENIC
SBS Chr4 5059374 A-T Homo INTERGENIC
SBS Chr4 20051419 C-T Homo INTRON
SBS Chr4 30009382 G-T Homo INTERGENIC
SBS Chr5 73990 T-A Hetero INTRON
SBS Chr5 25248454 C-T Homo INTERGENIC
SBS Chr5 29173391 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake05g276500
SBS Chr6 6416172 C-T Homo INTERGENIC
SBS Chr6 6416173 G-T Homo INTERGENIC
SBS Chr6 25377354 G-A Homo INTERGENIC
SBS Chr7 6980272 C-A Hetero INTERGENIC
SBS Chr7 14591875 G-A Hetero INTERGENIC
SBS Chr7 16711124 C-T Hetero INTRON
SBS Chr7 16714712 A-G Hetero INTERGENIC
SBS Chr8 12772384 T-G Hetero INTERGENIC
SBS Chr9 8842118 T-C Homo INTERGENIC
SBS Chr10 8519333 T-G Hetero INTRON
SBS Chr10 8879731 G-C Hetero INTERGENIC
SBS Chr10 11550005 A-G Homo INTERGENIC
SBS Chr11 3410606 T-C Homo INTRON
SBS Chr11 13400935 A-G Homo INTERGENIC
SBS Chr11 14674067 G-A Homo INTERGENIC
SBS Chr11 16066290 C-T Homo INTERGENIC
SBS Chr11 23372816 C-A Hetero INTERGENIC
SBS Chr12 8635043 C-T Hetero INTERGENIC
SBS Chr12 26390488 C-G Hetero INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 4881001 4898000 16999 10
Deletion Chr6 7628625 7628627 2
Deletion Chr10 8706655 8706656 1
Deletion Chr9 9584299 9584300 1
Deletion Chr8 12652401 12652404 3
Deletion Chr8 16522001 16682000 159999 9
Deletion Chr12 17886284 17886296 12
Deletion Chr4 22231219 22231221 2
Deletion Chr4 33816313 33816318 5
Deletion Chr3 36649001 36665000 15999 2

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 6181247 6181250 2
Insertion Chr10 11947046 11947049 2
Insertion Chr3 21317075 21317077 1
Insertion Chr4 10335753 10335755 1
Insertion Chr6 11347 11349 1
Insertion Chr8 4912426 4912428 1

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 17117867 17483152 2
Inversion Chr9 17117874 17483156 2
Inversion Chr1 23886791 23887322
Inversion Chr11 27120938 27121250 OsKitaake11g221300
Inversion Chr3 36623055 36664773

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10613286	A-G	Hetero	INTERGENIC
SBS	Chr1	13418159	G-A	Hetero	INTERGENIC
SBS	Chr1	16922193	C-T	Hetero	INTERGENIC
SBS	Chr2	4751181	G-A	Hetero	INTRON
SBS	Chr2	10280343	T-A	Hetero	INTERGENIC
SBS	Chr2	11476635	C-T	Hetero	INTERGENIC
SBS	Chr2	21180633	A-T	Hetero	INTERGENIC
SBS	Chr2	22065997	G-A	Hetero	INTRON
SBS	Chr2	25414689	A-C	Hetero	INTERGENIC
SBS	Chr2	31229663	C-A	Hetero	INTERGENIC
SBS	Chr2	31233670	A-C	Hetero	INTERGENIC
SBS	Chr2	31618758	T-G	Homo	INTERGENIC
SBS	Chr3	1928613	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g027600
SBS	Chr4	1606536	G-A	Homo	INTERGENIC
SBS	Chr4	5059374	A-T	Homo	INTERGENIC
SBS	Chr4	20051419	C-T	Homo	INTRON
SBS	Chr4	30009382	G-T	Homo	INTERGENIC
SBS	Chr5	73990	T-A	Hetero	INTRON
SBS	Chr5	25248454	C-T	Homo	INTERGENIC
SBS	Chr5	29173391	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g276500
SBS	Chr6	6416172	C-T	Homo	INTERGENIC
SBS	Chr6	6416173	G-T	Homo	INTERGENIC
SBS	Chr6	25377354	G-A	Homo	INTERGENIC
SBS	Chr7	6980272	C-A	Hetero	INTERGENIC
SBS	Chr7	14591875	G-A	Hetero	INTERGENIC
SBS	Chr7	16711124	C-T	Hetero	INTRON
SBS	Chr7	16714712	A-G	Hetero	INTERGENIC
SBS	Chr8	12772384	T-G	Hetero	INTERGENIC
SBS	Chr9	8842118	T-C	Homo	INTERGENIC
SBS	Chr10	8519333	T-G	Hetero	INTRON
SBS	Chr10	8879731	G-C	Hetero	INTERGENIC
SBS	Chr10	11550005	A-G	Homo	INTERGENIC
SBS	Chr11	3410606	T-C	Homo	INTRON
SBS	Chr11	13400935	A-G	Homo	INTERGENIC
SBS	Chr11	14674067	G-A	Homo	INTERGENIC
SBS	Chr11	16066290	C-T	Homo	INTERGENIC
SBS	Chr11	23372816	C-A	Hetero	INTERGENIC
SBS	Chr12	8635043	C-T	Hetero	INTERGENIC
SBS	Chr12	26390488	C-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	4881001	4898000	16999	10
Deletion	Chr6	7628625	7628627	2
Deletion	Chr10	8706655	8706656	1
Deletion	Chr9	9584299	9584300	1
Deletion	Chr8	12652401	12652404	3
Deletion	Chr8	16522001	16682000	159999	9
Deletion	Chr12	17886284	17886296	12
Deletion	Chr4	22231219	22231221	2
Deletion	Chr4	33816313	33816318	5
Deletion	Chr3	36649001	36665000	15999	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	17117867	17483152	2
Inversion	Chr9	17117874	17483156	2
Inversion	Chr1	23886791	23887322
Inversion	Chr11	27120938	27121250	OsKitaake11g221300
Inversion	Chr3	36623055	36664773

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes