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| Mutant Information |
|---|
| Mutant Name | FN881-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN881-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Phenotype |
|
| Variant Information |
|---|
Single base substitutions: 29
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 11255989 | G-A | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr2 | 4558302 | T-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 12184455 | C-G | Hetero | INTRON | |
| SBS | Chr2 | 21241425 | G-A | Hetero | INTRON | |
| SBS | Chr3 | 9937580 | G-A | Hetero | INTRON | |
| SBS | Chr3 | 17936275 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 29573932 | A-C | Homo | NON_SYNONYMOUS_CODING | OsKitaake03g308300 |
| SBS | Chr4 | 4616873 | T-C | Homo | INTERGENIC | |
| SBS | Chr4 | 23559098 | A-T | Homo | INTERGENIC | |
| SBS | Chr5 | 9903075 | T-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 14006722 | C-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 7081488 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 9961188 | T-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 16798690 | T-C | Hetero | INTRON | |
| SBS | Chr6 | 17684912 | A-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 18853631 | A-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 20675623 | G-A | Homo | INTERGENIC | |
| SBS | Chr7 | 3925529 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 7228617 | A-G | Homo | INTRON | |
| SBS | Chr8 | 1844912 | A-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 24983551 | C-G | Homo | INTERGENIC | |
| SBS | Chr9 | 4885836 | C-T | Homo | INTERGENIC | |
| SBS | Chr9 | 4885837 | C-T | Homo | INTERGENIC | |
| SBS | Chr10 | 20191445 | C-T | Homo | INTERGENIC | |
| SBS | Chr10 | 23393271 | C-T | Homo | INTERGENIC | |
| SBS | Chr11 | 12566271 | G-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 13550251 | T-C | Homo | INTERGENIC | |
| SBS | Chr11 | 16805816 | T-A | Homo | INTERGENIC | |
| SBS | Chr11 | 19055249 | C-A | Hetero | INTERGENIC |
Deletions: 13
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr7 | 3491001 | 3505000 | 13999 | 4 |
| Deletion | Chr10 | 4599028 | 4599030 | 2 | |
| Deletion | Chr12 | 9235813 | 9235814 | 1 | |
| Deletion | Chr10 | 10116093 | 10116102 | 9 | |
| Deletion | Chr2 | 10470503 | 10470507 | 4 | OsKitaake02g124500 |
| Deletion | Chr7 | 11704889 | 11704890 | 1 | |
| Deletion | Chr9 | 15680158 | 15680159 | 1 | |
| Deletion | Chr1 | 17526001 | 17541000 | 14999 | |
| Deletion | Chr2 | 17761106 | 17761108 | 2 | |
| Deletion | Chr4 | 24108695 | 24108700 | 5 | |
| Deletion | Chr6 | 27732940 | 27732942 | 2 | |
| Deletion | Chr2 | 29438216 | 29438219 | 3 | OsKitaake02g296400 |
| Deletion | Chr1 | 38844623 | 38844625 | 2 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 28636221 | 28636224 | 2 | |
| Insertion | Chr1 | 39543774 | 39543777 | 2 |
Inversions: 3
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr10 | 13759573 | 14702777 | OsKitaake10g083900 |
| Inversion | Chr1 | 27069034 | 27134543 | |
| Inversion | Chr1 | 27069041 | 27134547 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr6 | 2442597 | Chr2 | 9742906 | OsKitaake02g119000 |
| Translocation | Chr6 | 2442614 | Chr2 | 9737283 |