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Mutant Information

Mutant Name	FN882-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN882-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 28

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 18901009 G-A Homo INTERGENIC
SBS Chr1 22276392 C-A Homo SYNONYMOUS_CODING
SBS Chr1 33909151 G-A Hetero SYNONYMOUS_CODING
SBS Chr1 43698163 G-T Hetero INTERGENIC
SBS Chr2 1616094 A-G Homo INTERGENIC
SBS Chr2 4158884 T-A Homo INTRON
SBS Chr2 25683590 A-T Hetero INTERGENIC
SBS Chr3 2389399 C-T Homo SYNONYMOUS_CODING
SBS Chr3 2604143 G-A Homo NON_SYNONYMOUS_CODING OsKitaake03g036800
SBS Chr3 16273393 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g207000
SBS Chr4 3699294 C-T Hetero INTERGENIC
SBS Chr4 4912752 A-G Homo INTERGENIC
SBS Chr4 7935214 G-A Homo INTERGENIC
SBS Chr6 771216 C-T Hetero INTRON
SBS Chr6 17504638 G-T Hetero INTERGENIC
SBS Chr6 30617039 C-T Hetero INTRON
SBS Chr7 14511404 A-G Homo INTERGENIC
SBS Chr9 6150764 G-A Hetero INTERGENIC
SBS Chr9 13990137 G-T Hetero INTERGENIC
SBS Chr10 1504017 A-G Hetero INTERGENIC
SBS Chr11 16880416 A-T Hetero INTERGENIC
SBS Chr11 16938488 G-A Hetero INTERGENIC
SBS Chr11 21650466 C-G Homo INTERGENIC
SBS Chr11 28640812 G-A Homo INTRON
SBS Chr12 331903 A-T Hetero INTERGENIC
SBS Chr12 331904 G-T Hetero INTERGENIC
SBS Chr12 11889308 G-A Hetero INTERGENIC
SBS Chr12 21013796 T-C Hetero INTRON

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 2086318 2086323 5
Deletion Chr4 4238133 4238137 4
Deletion Chr9 5114288 5114434 146
Deletion Chr3 20035532 20035687 155
Deletion Chr11 20374215 20374218 3
Deletion Chr3 21419001 21592000 172999 12
Deletion Chr6 24076050 24076056 6
Deletion Chr3 27018465 27018467 2
Deletion Chr1 28161189 28161527 338
Deletion Chr3 33214001 33232000 17999 3
Deletion Chr4 35439740 35439741 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 3050326 3137178 OsKitaake05g036100
Inversion Chr5 3050335 3137179 OsKitaake05g036100

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 2501603 Chr3 33215985 OsKitaake09g013600
Translocation Chr9 2501679 Chr3 33216595 OsKitaake09g013600
Translocation Chr4 34849588 Chr1 21385708 OsKitaake04g291600
Translocation Chr4 34943973 Chr1 21385705 OsKitaake04g292500

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	18901009	G-A	Homo	INTERGENIC
SBS	Chr1	22276392	C-A	Homo	SYNONYMOUS_CODING
SBS	Chr1	33909151	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr1	43698163	G-T	Hetero	INTERGENIC
SBS	Chr2	1616094	A-G	Homo	INTERGENIC
SBS	Chr2	4158884	T-A	Homo	INTRON
SBS	Chr2	25683590	A-T	Hetero	INTERGENIC
SBS	Chr3	2389399	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr3	2604143	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g036800
SBS	Chr3	16273393	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g207000
SBS	Chr4	3699294	C-T	Hetero	INTERGENIC
SBS	Chr4	4912752	A-G	Homo	INTERGENIC
SBS	Chr4	7935214	G-A	Homo	INTERGENIC
SBS	Chr6	771216	C-T	Hetero	INTRON
SBS	Chr6	17504638	G-T	Hetero	INTERGENIC
SBS	Chr6	30617039	C-T	Hetero	INTRON
SBS	Chr7	14511404	A-G	Homo	INTERGENIC
SBS	Chr9	6150764	G-A	Hetero	INTERGENIC
SBS	Chr9	13990137	G-T	Hetero	INTERGENIC
SBS	Chr10	1504017	A-G	Hetero	INTERGENIC
SBS	Chr11	16880416	A-T	Hetero	INTERGENIC
SBS	Chr11	16938488	G-A	Hetero	INTERGENIC
SBS	Chr11	21650466	C-G	Homo	INTERGENIC
SBS	Chr11	28640812	G-A	Homo	INTRON
SBS	Chr12	331903	A-T	Hetero	INTERGENIC
SBS	Chr12	331904	G-T	Hetero	INTERGENIC
SBS	Chr12	11889308	G-A	Hetero	INTERGENIC
SBS	Chr12	21013796	T-C	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	2086318	2086323	5
Deletion	Chr4	4238133	4238137	4
Deletion	Chr9	5114288	5114434	146
Deletion	Chr3	20035532	20035687	155
Deletion	Chr11	20374215	20374218	3
Deletion	Chr3	21419001	21592000	172999	12
Deletion	Chr6	24076050	24076056	6
Deletion	Chr3	27018465	27018467	2
Deletion	Chr1	28161189	28161527	338
Deletion	Chr3	33214001	33232000	17999	3
Deletion	Chr4	35439740	35439741	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	3050326	3137178	OsKitaake05g036100
Inversion	Chr5	3050335	3137179	OsKitaake05g036100

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes