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Mutant Information

Mutant Name	FN883-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN883-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000014 (Panicle Weight) = Normal (Between 75% and 125%) TO:0000207 (Plant height) = Normal (Between 75% and 125%) TO:0000445 (Seed Number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Low (Between 25% and 75%) TO:0000639 (Seed fertility) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Phenotype Changes (Hover to Zoom-In)

Variant Information

Single base substitutions: 45

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3639322 A-T Homo INTERGENIC
SBS Chr1 3639323 A-T Homo INTERGENIC
SBS Chr1 9790648 C-G Homo INTRON
SBS Chr1 14609811 G-A Homo INTRON
SBS Chr1 30713325 C-T Hetero INTERGENIC
SBS Chr1 31130021 G-C Hetero INTERGENIC
SBS Chr1 42696927 C-T Hetero INTERGENIC
SBS Chr2 4350894 C-T Hetero INTERGENIC
SBS Chr2 24779702 T-C Hetero INTERGENIC
SBS Chr2 25215864 C-T Hetero INTERGENIC
SBS Chr2 28806519 G-A Hetero INTERGENIC
SBS Chr2 32803022 A-G Hetero INTERGENIC
SBS Chr2 34953168 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake02g364800
SBS Chr2 34973399 G-C Hetero INTRON
SBS Chr3 6905473 G-A Hetero INTERGENIC
SBS Chr3 35199152 G-A Homo INTERGENIC
SBS Chr4 2303309 A-T Hetero INTERGENIC
SBS Chr4 7846713 G-A Hetero INTERGENIC
SBS Chr4 15420342 C-T Hetero INTERGENIC
SBS Chr4 17563784 G-A Hetero INTERGENIC
SBS Chr4 22630905 G-C Homo INTERGENIC
SBS Chr4 23702405 T-C Hetero INTERGENIC
SBS Chr4 24391087 T-G Hetero INTRON
SBS Chr4 28892445 G-A Hetero INTRON
SBS Chr6 4631100 C-A Hetero UTR_3_PRIME
SBS Chr6 5754170 A-T Hetero INTRON
SBS Chr6 8780624 G-A Hetero INTERGENIC
SBS Chr6 14612084 G-A Hetero INTERGENIC
SBS Chr6 21115111 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake06g187500
SBS Chr6 26411046 G-T Hetero INTRON
SBS Chr7 13071369 C-T Hetero INTERGENIC
SBS Chr7 23869756 T-A Homo INTERGENIC
SBS Chr8 9627078 A-G Homo INTERGENIC
SBS Chr8 12901406 G-T Hetero INTERGENIC
SBS Chr8 15693526 A-T Homo INTERGENIC
SBS Chr8 15693527 C-T Homo INTERGENIC
SBS Chr8 16366637 G-T Hetero INTERGENIC
SBS Chr8 20021799 G-A Homo INTERGENIC
SBS Chr9 5642914 A-C Homo INTERGENIC
SBS Chr9 13108329 G-A Hetero INTERGENIC
SBS Chr9 21591066 A-T Homo INTERGENIC
SBS Chr9 21814269 C-T Hetero INTRON
SBS Chr10 3276947 T-G Homo INTERGENIC
SBS Chr11 6837158 G-A Hetero INTERGENIC
SBS Chr12 15017479 G-A Hetero INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 11283 11284 1
Deletion Chr12 1324493 1324504 11
Deletion Chr12 1905634 1905639 5
Deletion Chr2 3957948 3957950 2
Deletion Chr4 4318884 4318885 1
Deletion Chr1 4865165 4865171 6
Deletion Chr1 5416795 5416801 6
Deletion Chr9 5437757 5437760 3
Deletion Chr1 13633959 13633962 3 OsKitaake01g158600
Deletion Chr4 17996562 17996569 7 OsKitaake04g090700
Deletion Chr9 19343328 19343330 2
Deletion Chr7 19360804 19360819 15
Deletion Chr12 19905087 19905090 3
Deletion Chr5 20665001 20676000 10999 OsKitaake05g165100
Deletion Chr6 23544392 23544400 8

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 14390929 14390931 1
Insertion Chr2 17642860 17642863 2 OsKitaake02g176900
Insertion Chr3 37634025 37634028 2
Insertion Chr9 8140602 8140605 2
Insertion Chr1 17265140 17265142 1
Insertion Chr8 17299694 17299698 3

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3639322	A-T	Homo	INTERGENIC
SBS	Chr1	3639323	A-T	Homo	INTERGENIC
SBS	Chr1	9790648	C-G	Homo	INTRON
SBS	Chr1	14609811	G-A	Homo	INTRON
SBS	Chr1	30713325	C-T	Hetero	INTERGENIC
SBS	Chr1	31130021	G-C	Hetero	INTERGENIC
SBS	Chr1	42696927	C-T	Hetero	INTERGENIC
SBS	Chr2	4350894	C-T	Hetero	INTERGENIC
SBS	Chr2	24779702	T-C	Hetero	INTERGENIC
SBS	Chr2	25215864	C-T	Hetero	INTERGENIC
SBS	Chr2	28806519	G-A	Hetero	INTERGENIC
SBS	Chr2	32803022	A-G	Hetero	INTERGENIC
SBS	Chr2	34953168	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g364800
SBS	Chr2	34973399	G-C	Hetero	INTRON
SBS	Chr3	6905473	G-A	Hetero	INTERGENIC
SBS	Chr3	35199152	G-A	Homo	INTERGENIC
SBS	Chr4	2303309	A-T	Hetero	INTERGENIC
SBS	Chr4	7846713	G-A	Hetero	INTERGENIC
SBS	Chr4	15420342	C-T	Hetero	INTERGENIC
SBS	Chr4	17563784	G-A	Hetero	INTERGENIC
SBS	Chr4	22630905	G-C	Homo	INTERGENIC
SBS	Chr4	23702405	T-C	Hetero	INTERGENIC
SBS	Chr4	24391087	T-G	Hetero	INTRON
SBS	Chr4	28892445	G-A	Hetero	INTRON
SBS	Chr6	4631100	C-A	Hetero	UTR_3_PRIME
SBS	Chr6	5754170	A-T	Hetero	INTRON
SBS	Chr6	8780624	G-A	Hetero	INTERGENIC
SBS	Chr6	14612084	G-A	Hetero	INTERGENIC
SBS	Chr6	21115111	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g187500
SBS	Chr6	26411046	G-T	Hetero	INTRON
SBS	Chr7	13071369	C-T	Hetero	INTERGENIC
SBS	Chr7	23869756	T-A	Homo	INTERGENIC
SBS	Chr8	9627078	A-G	Homo	INTERGENIC
SBS	Chr8	12901406	G-T	Hetero	INTERGENIC
SBS	Chr8	15693526	A-T	Homo	INTERGENIC
SBS	Chr8	15693527	C-T	Homo	INTERGENIC
SBS	Chr8	16366637	G-T	Hetero	INTERGENIC
SBS	Chr8	20021799	G-A	Homo	INTERGENIC
SBS	Chr9	5642914	A-C	Homo	INTERGENIC
SBS	Chr9	13108329	G-A	Hetero	INTERGENIC
SBS	Chr9	21591066	A-T	Homo	INTERGENIC
SBS	Chr9	21814269	C-T	Hetero	INTRON
SBS	Chr10	3276947	T-G	Homo	INTERGENIC
SBS	Chr11	6837158	G-A	Hetero	INTERGENIC
SBS	Chr12	15017479	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	11283	11284	1
Deletion	Chr12	1324493	1324504	11
Deletion	Chr12	1905634	1905639	5
Deletion	Chr2	3957948	3957950	2
Deletion	Chr4	4318884	4318885	1
Deletion	Chr1	4865165	4865171	6
Deletion	Chr1	5416795	5416801	6
Deletion	Chr9	5437757	5437760	3
Deletion	Chr1	13633959	13633962	3	OsKitaake01g158600
Deletion	Chr4	17996562	17996569	7	OsKitaake04g090700
Deletion	Chr9	19343328	19343330	2
Deletion	Chr7	19360804	19360819	15
Deletion	Chr12	19905087	19905090	3
Deletion	Chr5	20665001	20676000	10999	OsKitaake05g165100
Deletion	Chr6	23544392	23544400	8

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes