Search Kitaake

Mutant Information

Mutant Name	FN886-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN886-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 41

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 13624744 C-T Hetero UTR_3_PRIME
SBS Chr1 27490626 C-T Homo INTRON
SBS Chr1 28778707 A-G Hetero INTERGENIC
SBS Chr2 10481171 T-G Hetero INTERGENIC
SBS Chr2 14263464 T-A Hetero INTERGENIC
SBS Chr2 17722190 C-G Hetero INTRON
SBS Chr2 18095726 A-G Hetero INTRON
SBS Chr2 24181590 C-T Hetero INTERGENIC
SBS Chr2 27780066 C-T Hetero INTERGENIC
SBS Chr3 10557287 C-T Hetero INTRON
SBS Chr3 14304765 T-C Hetero INTERGENIC
SBS Chr3 15962662 C-T Hetero INTERGENIC
SBS Chr3 29585921 G-A Homo INTERGENIC
SBS Chr3 35087245 A-C Hetero NON_SYNONYMOUS_CODING OsKitaake03g383900
SBS Chr4 4780876 A-G Homo INTERGENIC
SBS Chr4 9663342 A-G Homo INTERGENIC
SBS Chr4 12425400 G-A Homo INTERGENIC
SBS Chr4 22470274 A-T Homo INTRON
SBS Chr4 34735446 C-T Hetero UTR_5_PRIME
SBS Chr5 16962146 G-A Hetero INTRON
SBS Chr5 29095325 T-A Hetero INTRON
SBS Chr6 18742316 T-A Hetero INTERGENIC
SBS Chr6 22567831 A-G Hetero INTERGENIC
SBS Chr6 23878463 T-A Hetero SYNONYMOUS_CODING
SBS Chr6 28712778 C-T Hetero INTERGENIC
SBS Chr7 764461 A-C Homo NON_SYNONYMOUS_CODING OsKitaake07g009400
SBS Chr7 9068598 G-A Homo INTRON
SBS Chr7 12212067 A-T Homo INTERGENIC
SBS Chr7 12212068 A-T Homo INTERGENIC
SBS Chr7 28536052 G-A Homo INTRON
SBS Chr8 15687900 A-G Homo INTERGENIC
SBS Chr8 29088397 G-A Hetero INTERGENIC
SBS Chr9 18950039 G-A Homo INTRON
SBS Chr10 21310628 G-A Homo INTERGENIC
SBS Chr11 10001147 G-C Hetero INTERGENIC
SBS Chr11 15906428 A-G Hetero SYNONYMOUS_CODING
SBS Chr11 23577839 C-T Hetero INTERGENIC
SBS Chr11 23975207 C-T Hetero INTERGENIC
SBS Chr11 29437943 T-C Hetero INTERGENIC
SBS Chr12 19083280 T-C Hetero INTERGENIC
SBS Chr12 23153294 G-A Hetero INTRON

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 2954272 2954280 8
Deletion Chr5 4898339 4898344 5
Deletion Chr4 4971862 4971879 17
Deletion Chr11 5831927 5832153 226
Deletion Chr8 8571895 8571898 3
Deletion Chr11 18975669 18975670 1
Deletion Chr10 21307903 21307904 1
Deletion Chr9 21519739 21519744 5
Deletion Chr7 22935742 22935750 8
Deletion Chr3 25094942 25094954 12
Deletion Chr6 25366076 25366077 1
Deletion Chr6 28004929 28004931 2
Deletion Chr6 28612649 28612665 16 OsKitaake06g263100
Deletion Chr7 29512129 29512131 2

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr6 8019724 8019727 2
Insertion Chr9 19841021 19841024 2
Insertion Chr3 11386 11456 69
Insertion Chr4 13238148 13238150 1

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13624744	C-T	Hetero	UTR_3_PRIME
SBS	Chr1	27490626	C-T	Homo	INTRON
SBS	Chr1	28778707	A-G	Hetero	INTERGENIC
SBS	Chr2	10481171	T-G	Hetero	INTERGENIC
SBS	Chr2	14263464	T-A	Hetero	INTERGENIC
SBS	Chr2	17722190	C-G	Hetero	INTRON
SBS	Chr2	18095726	A-G	Hetero	INTRON
SBS	Chr2	24181590	C-T	Hetero	INTERGENIC
SBS	Chr2	27780066	C-T	Hetero	INTERGENIC
SBS	Chr3	10557287	C-T	Hetero	INTRON
SBS	Chr3	14304765	T-C	Hetero	INTERGENIC
SBS	Chr3	15962662	C-T	Hetero	INTERGENIC
SBS	Chr3	29585921	G-A	Homo	INTERGENIC
SBS	Chr3	35087245	A-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g383900
SBS	Chr4	4780876	A-G	Homo	INTERGENIC
SBS	Chr4	9663342	A-G	Homo	INTERGENIC
SBS	Chr4	12425400	G-A	Homo	INTERGENIC
SBS	Chr4	22470274	A-T	Homo	INTRON
SBS	Chr4	34735446	C-T	Hetero	UTR_5_PRIME
SBS	Chr5	16962146	G-A	Hetero	INTRON
SBS	Chr5	29095325	T-A	Hetero	INTRON
SBS	Chr6	18742316	T-A	Hetero	INTERGENIC
SBS	Chr6	22567831	A-G	Hetero	INTERGENIC
SBS	Chr6	23878463	T-A	Hetero	SYNONYMOUS_CODING
SBS	Chr6	28712778	C-T	Hetero	INTERGENIC
SBS	Chr7	764461	A-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake07g009400
SBS	Chr7	9068598	G-A	Homo	INTRON
SBS	Chr7	12212067	A-T	Homo	INTERGENIC
SBS	Chr7	12212068	A-T	Homo	INTERGENIC
SBS	Chr7	28536052	G-A	Homo	INTRON
SBS	Chr8	15687900	A-G	Homo	INTERGENIC
SBS	Chr8	29088397	G-A	Hetero	INTERGENIC
SBS	Chr9	18950039	G-A	Homo	INTRON
SBS	Chr10	21310628	G-A	Homo	INTERGENIC
SBS	Chr11	10001147	G-C	Hetero	INTERGENIC
SBS	Chr11	15906428	A-G	Hetero	SYNONYMOUS_CODING
SBS	Chr11	23577839	C-T	Hetero	INTERGENIC
SBS	Chr11	23975207	C-T	Hetero	INTERGENIC
SBS	Chr11	29437943	T-C	Hetero	INTERGENIC
SBS	Chr12	19083280	T-C	Hetero	INTERGENIC
SBS	Chr12	23153294	G-A	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	2954272	2954280	8
Deletion	Chr5	4898339	4898344	5
Deletion	Chr4	4971862	4971879	17
Deletion	Chr11	5831927	5832153	226
Deletion	Chr8	8571895	8571898	3
Deletion	Chr11	18975669	18975670	1
Deletion	Chr10	21307903	21307904	1
Deletion	Chr9	21519739	21519744	5
Deletion	Chr7	22935742	22935750	8
Deletion	Chr3	25094942	25094954	12
Deletion	Chr6	25366076	25366077	1
Deletion	Chr6	28004929	28004931	2
Deletion	Chr6	28612649	28612665	16	OsKitaake06g263100
Deletion	Chr7	29512129	29512131	2

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes