Search Kitaake
| Mutant Information |
|---|
| Mutant Name | FN888-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN888-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Phenotype |
|
| Phenotype Changes (Hover to Zoom-In) | 
|
| Variant Information |
|---|
Single base substitutions: 34
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 13827987 | T-C | Hetero | INTERGENIC | |
| SBS | Chr1 | 24610323 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 26027887 | C-T | Homo | INTRON | |
| SBS | Chr1 | 30960758 | A-T | Hetero | UTR_3_PRIME | |
| SBS | Chr1 | 35267966 | C-T | Homo | INTERGENIC | |
| SBS | Chr1 | 36887099 | T-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 7841 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 2217547 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 4412768 | G-A | Hetero | UTR_3_PRIME | |
| SBS | Chr2 | 8128876 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 30386619 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 14515855 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 15295744 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 5421731 | A-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 21069644 | C-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 31118466 | C-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 6805403 | T-C | Hetero | INTRON | |
| SBS | Chr5 | 7261151 | T-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 14321402 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 5360509 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 12650991 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 25670645 | T-C | Homo | INTERGENIC | |
| SBS | Chr7 | 5899346 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 19154796 | T-C | Hetero | INTRON | |
| SBS | Chr7 | 26709105 | A-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 14924996 | A-G | Hetero | UTR_3_PRIME | |
| SBS | Chr8 | 14925000 | A-T | Hetero | UTR_3_PRIME | |
| SBS | Chr8 | 26609286 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 3599698 | A-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 4652722 | A-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 8247171 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 18492967 | A-G | Hetero | UTR_3_PRIME | |
| SBS | Chr12 | 19824183 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 21232081 | G-A | Homo | INTERGENIC |
Deletions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr12 | 16745711 | 16745712 | 1 | |
| Deletion | Chr6 | 25673198 | 25673203 | 5 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr4 | 3416809 | 3416812 | 2 | |
| Insertion | Chr8 | 26682322 | 26682325 | 2 | |
| Insertion | Chr3 | 4089589 | 4089591 | 1 |
Inversions: 12
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr3 | 295428 | 720575 | |
| Inversion | Chr3 | 295440 | 720583 | |
| Inversion | Chr5 | 928311 | 1656208 | |
| Inversion | Chr5 | 928324 | 1656210 | |
| Inversion | Chr4 | 5073475 | 5581472 | |
| Inversion | Chr4 | 5075781 | 5581501 | |
| Inversion | Chr9 | 5854229 | 6331357 | |
| Inversion | Chr9 | 5854242 | 6331363 | |
| Inversion | Chr12 | 9106988 | 9239352 | |
| Inversion | Chr12 | 9239162 | 9341247 | |
| Inversion | Chr7 | 24393446 | 24730668 | OsKitaake07g217100 |
| Inversion | Chr7 | 24393449 | 24730676 | OsKitaake07g217100 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr2 | 26174285 | Chr1 | 21098783 | OsKitaake02g259500 |
| Translocation | Chr2 | 26182769 | Chr1 | 21098685 | OsKitaake02g259600 |