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Mutant Information

Mutant Name	FN889-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN889-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Low (Between 25% and 75%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 35

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 13230380 A-G Hetero INTERGENIC
SBS Chr1 22743975 A-C Hetero INTERGENIC
SBS Chr1 29751692 A-G Homo INTERGENIC
SBS Chr1 32632049 T-A Homo NON_SYNONYMOUS_CODING OsKitaake01g331000
SBS Chr2 10382769 T-C Hetero INTERGENIC
SBS Chr2 18437350 T-A Homo INTERGENIC
SBS Chr2 21262066 C-A Homo INTRON
SBS Chr3 9239101 C-T Hetero INTERGENIC
SBS Chr3 17772463 G-A Hetero INTERGENIC
SBS Chr3 23728838 A-T Homo INTRON
SBS Chr4 6877817 T-G Hetero INTERGENIC
SBS Chr4 14929829 A-T Hetero INTERGENIC
SBS Chr4 17991345 G-T Hetero INTERGENIC
SBS Chr4 18493470 G-A Homo INTERGENIC
SBS Chr4 33912040 C-G Hetero INTERGENIC
SBS Chr5 24586789 C-G Hetero SPLICE_SITE_ACCEPTOR OsKitaake05g199900
SBS Chr6 14540577 G-A Hetero INTERGENIC
SBS Chr6 18480149 T-C Hetero INTERGENIC
SBS Chr7 2955230 C-T Hetero INTERGENIC
SBS Chr7 13838821 A-T Hetero INTERGENIC
SBS Chr7 13838822 C-T Hetero INTERGENIC
SBS Chr7 15655187 G-C Hetero INTERGENIC
SBS Chr7 15655188 C-T Hetero INTERGENIC
SBS Chr7 18806315 T-C Hetero INTRON
SBS Chr7 22171029 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake07g187000
SBS Chr8 1613804 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake08g020400
SBS Chr8 3992360 A-T Hetero INTERGENIC
SBS Chr8 12180692 A-G Homo INTERGENIC
SBS Chr9 3065643 C-T Hetero INTERGENIC
SBS Chr9 6522759 A-G Hetero INTERGENIC
SBS Chr9 20982967 A-G Hetero INTERGENIC
SBS Chr10 7402591 G-A Hetero INTERGENIC
SBS Chr10 16527681 T-A Homo INTERGENIC
SBS Chr11 28671740 G-T Homo INTERGENIC
SBS Chr12 21441225 G-C Hetero INTERGENIC

Deletions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 484410 484411 1
Deletion Chr7 1637001 1721000 83999 16
Deletion Chr3 4440892 4440894 2
Deletion Chr4 8112613 8112615 2
Deletion Chr3 9327001 9542000 214999 30
Deletion Chr9 11796962 11796963 1
Deletion Chr2 20303736 20303738 2
Deletion Chr1 29183842 29183853 11 OsKitaake01g284200
Deletion Chr11 29629384 29629392 8

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 3762940 3762943 2
Insertion Chr5 13240544 13240547 2
Insertion Chr8 2708292 2708294 1

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 7629607 8034796 OsKitaake11g088500

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13230380	A-G	Hetero	INTERGENIC
SBS	Chr1	22743975	A-C	Hetero	INTERGENIC
SBS	Chr1	29751692	A-G	Homo	INTERGENIC
SBS	Chr1	32632049	T-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g331000
SBS	Chr2	10382769	T-C	Hetero	INTERGENIC
SBS	Chr2	18437350	T-A	Homo	INTERGENIC
SBS	Chr2	21262066	C-A	Homo	INTRON
SBS	Chr3	9239101	C-T	Hetero	INTERGENIC
SBS	Chr3	17772463	G-A	Hetero	INTERGENIC
SBS	Chr3	23728838	A-T	Homo	INTRON
SBS	Chr4	6877817	T-G	Hetero	INTERGENIC
SBS	Chr4	14929829	A-T	Hetero	INTERGENIC
SBS	Chr4	17991345	G-T	Hetero	INTERGENIC
SBS	Chr4	18493470	G-A	Homo	INTERGENIC
SBS	Chr4	33912040	C-G	Hetero	INTERGENIC
SBS	Chr5	24586789	C-G	Hetero	SPLICE_SITE_ACCEPTOR	OsKitaake05g199900
SBS	Chr6	14540577	G-A	Hetero	INTERGENIC
SBS	Chr6	18480149	T-C	Hetero	INTERGENIC
SBS	Chr7	2955230	C-T	Hetero	INTERGENIC
SBS	Chr7	13838821	A-T	Hetero	INTERGENIC
SBS	Chr7	13838822	C-T	Hetero	INTERGENIC
SBS	Chr7	15655187	G-C	Hetero	INTERGENIC
SBS	Chr7	15655188	C-T	Hetero	INTERGENIC
SBS	Chr7	18806315	T-C	Hetero	INTRON
SBS	Chr7	22171029	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g187000
SBS	Chr8	1613804	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g020400
SBS	Chr8	3992360	A-T	Hetero	INTERGENIC
SBS	Chr8	12180692	A-G	Homo	INTERGENIC
SBS	Chr9	3065643	C-T	Hetero	INTERGENIC
SBS	Chr9	6522759	A-G	Hetero	INTERGENIC
SBS	Chr9	20982967	A-G	Hetero	INTERGENIC
SBS	Chr10	7402591	G-A	Hetero	INTERGENIC
SBS	Chr10	16527681	T-A	Homo	INTERGENIC
SBS	Chr11	28671740	G-T	Homo	INTERGENIC
SBS	Chr12	21441225	G-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	484410	484411	1
Deletion	Chr7	1637001	1721000	83999	16
Deletion	Chr3	4440892	4440894	2
Deletion	Chr4	8112613	8112615	2
Deletion	Chr3	9327001	9542000	214999	30
Deletion	Chr9	11796962	11796963	1
Deletion	Chr2	20303736	20303738	2
Deletion	Chr1	29183842	29183853	11	OsKitaake01g284200
Deletion	Chr11	29629384	29629392	8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	7629607	8034796	OsKitaake11g088500

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes