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Mutant Information

Mutant Name	FN895-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN895-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 35

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1155733 T-A Homo INTERGENIC
SBS Chr1 7605121 A-G Homo SYNONYMOUS_CODING
SBS Chr1 19818024 G-T Hetero INTERGENIC
SBS Chr1 23504373 G-A Hetero INTERGENIC
SBS Chr1 24116248 T-C Hetero INTERGENIC
SBS Chr1 25658547 A-G Hetero UTR_3_PRIME
SBS Chr1 31503268 G-A Homo INTERGENIC
SBS Chr1 31503269 G-A Homo INTERGENIC
SBS Chr2 11407436 T-C Hetero INTERGENIC
SBS Chr2 23633886 A-T Homo INTRON
SBS Chr2 31550656 G-A Homo INTERGENIC
SBS Chr3 19265070 C-T Hetero INTERGENIC
SBS Chr3 20792097 A-C Homo INTERGENIC
SBS Chr3 22796170 C-T Homo INTERGENIC
SBS Chr4 1462214 C-T Hetero INTERGENIC
SBS Chr4 10237104 C-T Homo INTERGENIC
SBS Chr4 23584671 T-C Hetero INTERGENIC
SBS Chr4 24549603 G-T Homo INTERGENIC
SBS Chr4 28776795 G-A Homo INTERGENIC
SBS Chr4 30254377 T-C Homo INTERGENIC
SBS Chr4 36193418 C-T Hetero INTERGENIC
SBS Chr5 11719334 T-C Homo INTERGENIC
SBS Chr5 22650578 A-C Hetero INTERGENIC
SBS Chr6 4243341 T-A Hetero INTERGENIC
SBS Chr7 5376781 C-T Homo INTERGENIC
SBS Chr7 9727547 T-A Hetero INTERGENIC
SBS Chr9 4001072 C-T Homo INTERGENIC
SBS Chr9 7060859 T-C Homo INTERGENIC
SBS Chr9 9855098 C-T Hetero INTERGENIC
SBS Chr9 17801413 G-A Homo INTERGENIC
SBS Chr10 1349358 T-C Hetero INTERGENIC
SBS Chr10 14613122 C-G Hetero INTERGENIC
SBS Chr11 17653755 C-T Hetero INTERGENIC
SBS Chr12 14969579 C-A Homo INTERGENIC
SBS Chr12 26802025 G-A Hetero INTERGENIC

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 4134341 4134343 2
Deletion Chr1 4987607 4987620 13
Deletion Chr4 7282944 7282947 3
Deletion Chr8 10039834 10039835 1
Deletion Chr3 10686177 10686178 1
Deletion Chr7 12917827 12917912 85
Deletion Chr5 13991887 13991890 3
Deletion Chr4 16305388 16305389 1
Deletion Chr11 18093947 18094315 368
Deletion Chr12 18701853 18701855 2
Deletion Chr4 20667210 20667212 2
Deletion Chr8 23497079 23497081 2
Deletion Chr2 25185001 25254000 68999 6
Deletion Chr3 25425080 25425082 2
Deletion Chr8 27988595 27988601 6
Deletion Chr1 33045679 33045681 2
Deletion Chr2 33246621 33246622 1

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 23801118 23801121 2
Insertion Chr7 22110915 22110918 2
Insertion Chr7 29513677 29513680 2

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr2 23633402 Chr1 962767 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1155733	T-A	Homo	INTERGENIC
SBS	Chr1	7605121	A-G	Homo	SYNONYMOUS_CODING
SBS	Chr1	19818024	G-T	Hetero	INTERGENIC
SBS	Chr1	23504373	G-A	Hetero	INTERGENIC
SBS	Chr1	24116248	T-C	Hetero	INTERGENIC
SBS	Chr1	25658547	A-G	Hetero	UTR_3_PRIME
SBS	Chr1	31503268	G-A	Homo	INTERGENIC
SBS	Chr1	31503269	G-A	Homo	INTERGENIC
SBS	Chr2	11407436	T-C	Hetero	INTERGENIC
SBS	Chr2	23633886	A-T	Homo	INTRON
SBS	Chr2	31550656	G-A	Homo	INTERGENIC
SBS	Chr3	19265070	C-T	Hetero	INTERGENIC
SBS	Chr3	20792097	A-C	Homo	INTERGENIC
SBS	Chr3	22796170	C-T	Homo	INTERGENIC
SBS	Chr4	1462214	C-T	Hetero	INTERGENIC
SBS	Chr4	10237104	C-T	Homo	INTERGENIC
SBS	Chr4	23584671	T-C	Hetero	INTERGENIC
SBS	Chr4	24549603	G-T	Homo	INTERGENIC
SBS	Chr4	28776795	G-A	Homo	INTERGENIC
SBS	Chr4	30254377	T-C	Homo	INTERGENIC
SBS	Chr4	36193418	C-T	Hetero	INTERGENIC
SBS	Chr5	11719334	T-C	Homo	INTERGENIC
SBS	Chr5	22650578	A-C	Hetero	INTERGENIC
SBS	Chr6	4243341	T-A	Hetero	INTERGENIC
SBS	Chr7	5376781	C-T	Homo	INTERGENIC
SBS	Chr7	9727547	T-A	Hetero	INTERGENIC
SBS	Chr9	4001072	C-T	Homo	INTERGENIC
SBS	Chr9	7060859	T-C	Homo	INTERGENIC
SBS	Chr9	9855098	C-T	Hetero	INTERGENIC
SBS	Chr9	17801413	G-A	Homo	INTERGENIC
SBS	Chr10	1349358	T-C	Hetero	INTERGENIC
SBS	Chr10	14613122	C-G	Hetero	INTERGENIC
SBS	Chr11	17653755	C-T	Hetero	INTERGENIC
SBS	Chr12	14969579	C-A	Homo	INTERGENIC
SBS	Chr12	26802025	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	4134341	4134343	2
Deletion	Chr1	4987607	4987620	13
Deletion	Chr4	7282944	7282947	3
Deletion	Chr8	10039834	10039835	1
Deletion	Chr3	10686177	10686178	1
Deletion	Chr7	12917827	12917912	85
Deletion	Chr5	13991887	13991890	3
Deletion	Chr4	16305388	16305389	1
Deletion	Chr11	18093947	18094315	368
Deletion	Chr12	18701853	18701855	2
Deletion	Chr4	20667210	20667212	2
Deletion	Chr8	23497079	23497081	2
Deletion	Chr2	25185001	25254000	68999	6
Deletion	Chr3	25425080	25425082	2
Deletion	Chr8	27988595	27988601	6
Deletion	Chr1	33045679	33045681	2
Deletion	Chr2	33246621	33246622	1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr2	23633402	Chr1	962767	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes