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Mutant Information

Mutant Name	FN904-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN904-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 34

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 15658704 G-T Hetero INTERGENIC
SBS Chr1 16941073 G-A Hetero INTERGENIC
SBS Chr1 41674744 T-G Hetero INTERGENIC
SBS Chr1 41915611 C-A Hetero INTERGENIC
SBS Chr2 6166629 G-A Homo SYNONYMOUS_CODING
SBS Chr2 10605766 C-A Hetero INTERGENIC
SBS Chr3 12286329 G-A Hetero INTERGENIC
SBS Chr3 12672932 T-A Hetero INTRON
SBS Chr3 13240363 C-T Hetero INTERGENIC
SBS Chr3 13606413 G-A Hetero INTERGENIC
SBS Chr4 12583701 G-A Hetero INTERGENIC
SBS Chr4 23558870 C-T Homo UTR_3_PRIME
SBS Chr4 28934951 A-G Hetero INTERGENIC
SBS Chr5 13919227 A-T Hetero INTERGENIC
SBS Chr5 16354074 A-T Hetero INTERGENIC
SBS Chr5 25236704 G-A Hetero INTERGENIC
SBS Chr5 28955057 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake05g273100
SBS Chr6 2586580 G-A Homo INTERGENIC
SBS Chr6 7184398 C-T Hetero UTR_3_PRIME
SBS Chr6 12367265 G-A Homo INTERGENIC
SBS Chr7 527011 G-A Hetero INTERGENIC
SBS Chr7 25890053 T-G Hetero INTERGENIC
SBS Chr8 11394631 T-C Homo INTERGENIC
SBS Chr8 25271376 C-A Homo INTERGENIC
SBS Chr9 369336 A-G Hetero INTERGENIC
SBS Chr10 9156620 A-G Hetero INTERGENIC
SBS Chr10 16024751 G-A Homo INTRON
SBS Chr10 16024768 A-T Homo SPLICE_SITE_ACCEPTOR OsKitaake10g106200
SBS Chr11 1987132 G-A Hetero INTERGENIC
SBS Chr11 7056397 G-A Homo INTERGENIC
SBS Chr11 15939031 G-A Homo UTR_3_PRIME
SBS Chr11 19427547 T-A Homo INTERGENIC
SBS Chr12 5841236 A-T Hetero INTERGENIC
SBS Chr12 11933429 C-T Hetero INTERGENIC

Deletions: 19

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 1571622 1571629 7 OsKitaake04g010800
Deletion Chr3 4047766 4047769 3
Deletion Chr7 5392001 5403000 10999 3
Deletion Chr10 5691693 5691694 1 OsKitaake10g039400
Deletion Chr3 6454976 6454982 6 OsKitaake03g091800
Deletion Chr8 8273884 8273892 8
Deletion Chr12 10426140 10426147 7
Deletion Chr5 12589221 12589223 2
Deletion Chr1 13781075 13781077 2
Deletion Chr3 14063971 14063972 1
Deletion Chr12 14121858 14121859 1
Deletion Chr5 15581546 15581554 8
Deletion Chr10 16652587 16652592 5
Deletion Chr10 17441986 17441987 1
Deletion Chr9 17687146 17687147 1 OsKitaake09g133800
Deletion Chr2 19114419 19114420 1 OsKitaake02g186600
Deletion Chr11 20421729 20421730 1
Deletion Chr1 32241298 32241299 1
Deletion Chr3 36524067 36524072 5

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 15149474 15149477 2
Insertion Chr6 22119319 22119321 1
Insertion Chr7 13755670 13755675 4

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 2117174 2175968 OsKitaake05g023700
Inversion Chr7 5181003 5392027 2
Inversion Chr7 5181010 5403129 OsKitaake07g063300
Inversion Chr4 30931341 30943436
Inversion Chr4 30931347 30943452

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 5392040 Chr5 2176333 2
Translocation Chr9 11813730 Chr7 5181579 2
Translocation Chr8 22464542 Chr3 9824310

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	15658704	G-T	Hetero	INTERGENIC
SBS	Chr1	16941073	G-A	Hetero	INTERGENIC
SBS	Chr1	41674744	T-G	Hetero	INTERGENIC
SBS	Chr1	41915611	C-A	Hetero	INTERGENIC
SBS	Chr2	6166629	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr2	10605766	C-A	Hetero	INTERGENIC
SBS	Chr3	12286329	G-A	Hetero	INTERGENIC
SBS	Chr3	12672932	T-A	Hetero	INTRON
SBS	Chr3	13240363	C-T	Hetero	INTERGENIC
SBS	Chr3	13606413	G-A	Hetero	INTERGENIC
SBS	Chr4	12583701	G-A	Hetero	INTERGENIC
SBS	Chr4	23558870	C-T	Homo	UTR_3_PRIME
SBS	Chr4	28934951	A-G	Hetero	INTERGENIC
SBS	Chr5	13919227	A-T	Hetero	INTERGENIC
SBS	Chr5	16354074	A-T	Hetero	INTERGENIC
SBS	Chr5	25236704	G-A	Hetero	INTERGENIC
SBS	Chr5	28955057	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g273100
SBS	Chr6	2586580	G-A	Homo	INTERGENIC
SBS	Chr6	7184398	C-T	Hetero	UTR_3_PRIME
SBS	Chr6	12367265	G-A	Homo	INTERGENIC
SBS	Chr7	527011	G-A	Hetero	INTERGENIC
SBS	Chr7	25890053	T-G	Hetero	INTERGENIC
SBS	Chr8	11394631	T-C	Homo	INTERGENIC
SBS	Chr8	25271376	C-A	Homo	INTERGENIC
SBS	Chr9	369336	A-G	Hetero	INTERGENIC
SBS	Chr10	9156620	A-G	Hetero	INTERGENIC
SBS	Chr10	16024751	G-A	Homo	INTRON
SBS	Chr10	16024768	A-T	Homo	SPLICE_SITE_ACCEPTOR	OsKitaake10g106200
SBS	Chr11	1987132	G-A	Hetero	INTERGENIC
SBS	Chr11	7056397	G-A	Homo	INTERGENIC
SBS	Chr11	15939031	G-A	Homo	UTR_3_PRIME
SBS	Chr11	19427547	T-A	Homo	INTERGENIC
SBS	Chr12	5841236	A-T	Hetero	INTERGENIC
SBS	Chr12	11933429	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	1571622	1571629	7	OsKitaake04g010800
Deletion	Chr3	4047766	4047769	3
Deletion	Chr7	5392001	5403000	10999	3
Deletion	Chr10	5691693	5691694	1	OsKitaake10g039400
Deletion	Chr3	6454976	6454982	6	OsKitaake03g091800
Deletion	Chr8	8273884	8273892	8
Deletion	Chr12	10426140	10426147	7
Deletion	Chr5	12589221	12589223	2
Deletion	Chr1	13781075	13781077	2
Deletion	Chr3	14063971	14063972	1
Deletion	Chr12	14121858	14121859	1
Deletion	Chr5	15581546	15581554	8
Deletion	Chr10	16652587	16652592	5
Deletion	Chr10	17441986	17441987	1
Deletion	Chr9	17687146	17687147	1	OsKitaake09g133800
Deletion	Chr2	19114419	19114420	1	OsKitaake02g186600
Deletion	Chr11	20421729	20421730	1
Deletion	Chr1	32241298	32241299	1
Deletion	Chr3	36524067	36524072	5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	2117174	2175968	OsKitaake05g023700
Inversion	Chr7	5181003	5392027	2
Inversion	Chr7	5181010	5403129	OsKitaake07g063300
Inversion	Chr4	30931341	30943436
Inversion	Chr4	30931347	30943452

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes